Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq69 131 1e-25 seq31 125 6e-24 >seq69 Length=184949 Score = 131 bits (144), Expect = 1e-25 Identities = 721/1135 (64%), Gaps = 50/1135 (4%) Strand=Plus/Minus Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 ||| ||||| || | ||||| ||| ||| |||||| ||||| ||||||| ||||| Sbjct 89934 AAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAATGGATTC 89875 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTT 129257 ||| ||||| || || ||||| || | ||| || |||||| |||| | || ||||| Sbjct 89874 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 89815 Query 129258 TCGCAAACCGTGCTGTTTAATGTCttt---ttttAATTGTGTCCAGTCCCACATC---GA 129311 |||| ||| || |||| | ||| ||| ||| | ||| ||||| | || Sbjct 89814 GCGCACACCATG---TTTAGCGACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAGA 89758 Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAA 129371 ||| || ||| | ||||| || | || || || ||| || | || | Sbjct 89757 TGTTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTC 89698 Query 129372 GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAA 129431 ||| | || | | ||| || | ||||| | ||| | ||||||| || ||| | Sbjct 89697 GTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATA 89638 Query 129432 ATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 || | ||||| ||| | ||||||| || || || || |||||| | || | Sbjct 89637 GTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAA 89578 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 | || | ||| | || ||||| ||||| | ||| | ||| | || |||||| Sbjct 89577 CCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCG 89518 Query 129552 TCTATTGGATTT-TTG--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | ||| ||| ||| | | | | | |||||||||||||| || || | ||||| Sbjct 89517 TAGATTAGATCGCTTGGCTTCTGGGATC---GGATAGTAGTTGATATCAATGACCTTGTT 89461 Query 129609 TAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 | ||| || |||||| ||||| | | | | | | | ||| || || || Sbjct 89460 CAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAAGTTAAAC------AC 89407 Query 129669 ATCGATGTCGACAAATTGATTGACA--CAAATCGAGGCCAAATTGCAGACGGCACTTTCG 129726 | | |||||||||||| | |||| ||| || ||||| ||||| || || |||| Sbjct 89406 ACCATTGTCGACAAATT--TGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCG 89349 Query 129727 TTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | ||| |||||||||| | || |||||| ||||| ||| |||||||| Sbjct 89348 TCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAG 89289 Query 129787 TGCTTTTGATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCG 129844 | | ||||| |||| | ||||| ||||| ||||| | |||||| || ||||| | Sbjct 89288 TTTTGCTGATTCGACTTGCGA--TTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGG 89231 Query 129845 TTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTT---- 129900 |||||| || | || | ||||| |||| | | | |||||||| ||||| Sbjct 89230 TTTCGATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGAT-GGTCTTGCGG 89172 Query 129901 ACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTC-TGAGCCGTGTAC 129959 | || ||| ||||| |||| || ||||| | | || | | Sbjct 89171 GCCAA---GCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCA- 89116 Query 129960 GGTGTCGAGCA-AC--GGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTC 130016 ||||| || || | || |||| || || | | ||||||| || | ||||| Sbjct 89115 ---GTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGTTGGCTTC 89059 Query 130017 GACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCT 130076 || || ||||| |||||||| || | ||||| |||||| |||| ||| || || Sbjct 89058 CACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATG 88999 Query 130077 ATCCTCGGCACCCATGTTACGT-TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACG 130135 | || | || || | | | ||| || ||||| || | | |||||| ||||||| Sbjct 88998 AAGTTCATTA-CCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACG 88940 Query 130136 GTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCA 130192 | || | ||| ||||| | | || || || ||| || ||||| ||||||| || Sbjct 88939 GCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAG 88880 Query 130193 CGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGT 130247 | | | ||| | || |||||||| | | | | ||||||| |||||| ||||| Sbjct 88879 CAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGT 88825 >seq31 Length=344941 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| || || || |||| | || || ||| | || Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||||||||| |||||||||||||| || || || || ||||| Sbjct 305662 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 305603 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| ||||| | ||| |||||| Sbjct 305602 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 305543 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || ||||| |||| || || Sbjct 305542 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 305496 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| || || || |||| | || || ||| | || Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||||||||| |||||||||||||| || || || || ||||| Sbjct 323665 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 323724 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| ||||| | ||| |||||| Sbjct 323725 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 323784 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || ||||| |||| || || Sbjct 323785 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 323831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || |||||| | | Sbjct 305266 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 305207 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || || || |||||||| |||||||| || |||||| Sbjct 305206 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 305147 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | || || || || | |||||||| Sbjct 305146 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 305087 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 305086 ATTCAAAAGGAATCGAC 305070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || |||||| | | Sbjct 324061 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 324120 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || || || |||||||| |||||||| || |||||| Sbjct 324121 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 324180 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | || || || || | |||||||| Sbjct 324181 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 324240 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 324241 ATTCAAAAGGAATCGAC 324257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726414215150