Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-36 seq18 109 1e-18 >seq1 Length=1523961 Score = 168 bits (186), Expect = 1e-36 Identities = 569/869 (65%), Gaps = 18/869 (2%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 |||||| ||||| || |||||||| | |||||||| ||| ||||| | ||||| Sbjct 465635 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 465576 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAG-ATGCG 251663 |||| || ||||| |||| ||||| ||||| ||||| || | | || | || Sbjct 465575 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGC-ATGTAGCAAACG 465517 Query 251664 GTCTGCCACA-AACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATC-ATACGA 251721 || || ||| || || | ||||| | |||||| ||||||||||||||| || | | Sbjct 465516 ATCAGC-ACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCA 465458 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 | ||| | | || || ||||||||| || | | || || || | | ||| | Sbjct 465457 C-AGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTCG 465399 Query 251782 TTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACA-GGAGCTCGCCAAACTG 251840 | ||| ||| | | |||||||| | ||||| ||||||| ||| || |||| | Sbjct 465398 TGCACGCGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGTACATCAAGCACG-CAAAGTC 465340 Query 251841 TTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCAC 251900 ||||| || || || |||||||||| || || || | || || |||||||| | Sbjct 465339 ACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAG 465280 Query 251901 CCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| ||| | | ||||||||| | ||| ||||| || || || | | |||||||| Sbjct 465279 CCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGAC 465220 Query 251961 ACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTG 252017 | | | |||| | || || |||||| | | | |||| | ||||| Sbjct 465219 AGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTCGCACCACTTCAA 465160 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077 |||||| |||||||| || ||||| |||||||| ||| | || || | | Sbjct 465159 TGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCA-CGTAGCAAGTGGT 465101 Query 252078 CC-GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGA 252136 || ||||| ||| | |||| | |||| || || ||||||| || || || | Sbjct 465100 CCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGAA 465041 Query 252137 TGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG 252196 || ||| || |||||| | | || || ||||| ||| | ||||| Sbjct 465040 TGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGCACTTCAC 464981 Query 252197 TGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCA 252255 | || || | |||| ||| || |||| || ||||||||| | |||||||| |||| Sbjct 464980 TACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCCA 464921 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 || | | |||||||||| || || | |||| | | |||| | |||||| | | Sbjct 464920 AG-ACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGAC---CCAGTCCTTCAGG 464865 Query 252316 TCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 || || || | | |||||| | ||||| || | | | |||||||||||||| Sbjct 464864 TCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTCTTGTACATG 464805 Query 252376 GCGAACACATCAGGGTACTTGATTGGGAA 252404 || |||| || || | | ||||||||| Sbjct 464804 GCCCACACTTCCGGCTCTTGGATTGGGAA 464776 >seq18 Length=519368 Score = 109 bits (120), Expect = 1e-18 Identities = 377/580 (65%), Gaps = 25/580 (4%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 ||| |||| ||||||| || ||| | || |||||||| | |||| |||| ||| | || Sbjct 345963 GATTTGTGCAACTGTGAGTTTTCGTTGGCTTATGGTGGTATGATTTTGCTCAACAATGCC 346022 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | |||||||||| |||| || ||| | |||||| || || |||||| Sbjct 346023 CGTCTACGCCTCAAGCGTGGTCACCGTTACGGTTTGTGCGGTCCTAACGGTTGTGGTAAG 346082 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || ||||| || ||||| ||||| || |||||||||| || || ||| Sbjct 346083 TCGACGCTTATGCGTGCGATTGCCAACGGCCAATTGGAAGGATTCCCAAAGAAGGATGAA 346142 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGT---- 279586 | | ||| || | ||| |||||| || | | | || ||| ||| ||| Sbjct 346143 TTGAAGACTGTCTTTGTGGAGCACAACTTGCAGGCTTC------GGA-AGCCATGTTGCC 346195 Query 279587 -GT--TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTC-TCCTGAGGAAA 279642 || | || ||| | |||| | || | | || ||| ||| || | ||||| Sbjct 346196 AGTCATTGAATTCATGT--TCTG-CGATGAAGA-ATTGAAGGATACTCCTCGTCAGGAAG 346251 Query 279643 TCATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGTAG 279699 |||| | | || | | ||||| |||||||| ||| || ||| || Sbjct 346252 TCATTGACACGCTTGCTAGCGTCGGTTTCACTGATGAAA---TGCAGGCTCAGCCCGTGT 346308 Query 279700 GTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG 279759 || || || ||||||||||||||||| ||| | |||| ||||| || ||| | Sbjct 346309 CGTCGCTCTCTGGTGGTTGGAAGATGAAATTGGAGTTGGCTCGTGCCATGCTTATGCACG 346368 Query 279760 CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGC 279819 ||||| | || || | ||||| || || || ||| |||| || ||||| || ||| Sbjct 346369 CCGATATTCTGTTGTTGGATGAACCGACGAATCACTTGGATGTCAAGAACGTTGCGTGGT 346428 Query 279820 TAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTG 279879 | | | ||| || | |||| ||| ||| || || |||| || || || ||||||| Sbjct 346429 TGGAGAACTATCTCAACAGTTTGACGAACGTGACTAGTATCATGGTTTCCCATGACTCTG 346488 Query 279880 GCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 | ||| | || |||||| | |||||||||||| || Sbjct 346489 GTTTCTTGGACAACGTGTGTACCAACATCATTCACTACGA 346528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832717560710