Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq17 248 2e-60 seq31 140 6e-28 seq67 136 7e-27 seq18 116 7e-21 seq15 114 2e-20 seq8 89.7 9e-13 seq25 86.0 1e-11 >seq17 Length=533465 Score = 248 bits (274), Expect = 2e-60 Identities = 412/587 (70%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || |||| ||| || ||||| || || | ||| ||||| |||||| ||| Sbjct 484174 CCCGTGGCAACCACGAAATCCTCGGGTTCGTCATGCTGCAGCATGCGCCACATACACTCG 484115 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || || ||||||||||| |||||||||||| | | || | ||| || | | | || || Sbjct 484114 ACGTAATCCCGCGCATGACCCCAATCGCGCCTCGATTCAAGGTTGCCAATGTAAAGACAC 484055 Query 268331 TTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTC 268390 | | | || | | ||| ||| |||| ||||| || || || || ||||| Sbjct 484054 TCGTCAATACCCGCGTGAATGCGCACAACTGCGCGCGTGATCTTGCGTGTGACAAACGT- 483996 Query 268391 TCGCCACGTA-GAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCAT 268448 | ||| | || | || || |||||||| ||||| ||||| || ||| || |||||||| | Sbjct 483995 TGGCCCCCTACGTGGACTTTCGTGGTTAAAGAGAATGCCATT-CACTGCAAACATGCCGT 483937 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || ||||||||||||||||| ||||||| |||||| ||| || | | ||||| | Sbjct 483936 ACGCTTCACGGTAGTTCACGACGCTCCAGTACGCAAACTGCTTGGCGATGCCATACGGTG 483877 Query 268509 AACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGC 268567 | || |||| ||| ||||| || || ||||| || | || | ||||||| ||||| Sbjct 483876 ATCGCGGATAGAATGGCGT-GTTTTCGTTTTGCGGTGTAGCTTGCGCTTTGCCGTAGAGC 483818 Query 268568 TCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCC 268627 || ||| || |||||||||||||| || |||||||| | ||| || | ||||| Sbjct 483817 TCACTGGTTGACGCTTGGTAGAACTTGGTAGTTTTTTCCATACCACAATTGCGGATACAA 483758 Query 268628 TCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAAT 268687 | | || || || || ||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 483757 TTCAATAAGCGTAGTGTACCCATCGCATCGACGTCGGCTGTGTATTCGGACATTTCGAAC 483698 Query 268688 GACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC 268747 || |||| ||| || | || |||| || |||| ||| ||||| || || | Sbjct 483697 GAGACCTTGACGTGCGACATCGCTCCCAAATTGTAAATCTCGTCCGGCTTAACGCGAGCA 483638 Query 268748 ACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCAA 268794 | ||||| ||| |||| |||||| |||||||| || |||||||| Sbjct 483637 ATGATCTGACAGAGATTCGATGAGTCAGTGAGGTCGCCATAGTGCAA 483591 >seq31 Length=344941 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||||||| | || ||||| || || ||||| || ||| Sbjct 305496 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 305555 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||| | ||| || || || || Sbjct 305556 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 305615 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| ||||| ||||| | ||| | | ||| || Sbjct 305616 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 305675 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||| | ||||| || || |||||||| Sbjct 305676 TCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||||||| | || ||||| || || ||||| || ||| Sbjct 323831 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 323772 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||| | ||| || || || || Sbjct 323771 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 323712 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| ||||| ||||| | ||| | | ||| || Sbjct 323711 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 323652 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||| | ||||| || || |||||||| Sbjct 323651 TCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 305268 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 305327 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || ||||| || | | ||||| || || ||| Sbjct 305328 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 305387 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| || ||| ||| || || || | ||| | | || || Sbjct 305388 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 305447 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| ||||| | ||||| || || |||||||| Sbjct 305448 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 324059 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 324000 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || ||||| || | | ||||| || || ||| Sbjct 323999 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 323940 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| || ||| ||| || || || | ||| | | || || Sbjct 323939 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 323880 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| ||||| | ||||| || || |||||||| Sbjct 323879 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || |||||||| || | |||||||| | || || || ||||| || || ||| Sbjct 305034 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 305093 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || | || | || ||||| | |||||| || || || ||||| | |||||| || Sbjct 305094 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 305153 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| ||||||||||| || ||||| ||| ||| || || | ||| | | | Sbjct 305154 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGT 305213 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 305214 TCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || |||||||| || | |||||||| | || || || ||||| || || ||| Sbjct 324293 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 324234 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || | || | || ||||| | |||||| || || || ||||| | |||||| || Sbjct 324233 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 324174 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| ||||||||||| || ||||| ||| ||| || || | ||| | | | Sbjct 324173 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGT 324114 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 324113 TCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 >seq67 Length=206978 Score = 136 bits (150), Expect = 7e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || || || || | |||||||| || ||||| || || || || Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| || || || ||||| ||||||||||| || |||||| ||||||| || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | ||| || |||| |||||||| || ||||| || || |||||||| Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 178162 ATCTGCAT 178169 >seq18 Length=519368 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||||||||||||||| || | || || |||| ||| | ||||| || ||||| || Sbjct 346963 CGCCACTGGATGTACTGATTAGCAGTGATATCCAAGTGCTCTTCAATGTGATGGAAGGCG 346904 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || |||||||| | |||||| || ||||||||||| | || || ||| Sbjct 346903 TGCTGCGCCACGTACGCAAAACGCATGGCAGGGTGCTTCCACACGGTACCGGACGTTGGT 346844 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || | | |||||||||||| | |||||| ||||| ||||| |||| | Sbjct 346843 TCGACTTCACCAGTCAACATCTTGATGAGCGTCGACTTGCCAGCACCGTTGGGCCCAAGC 346784 Query 225161 AC 225162 || Sbjct 346783 AC 346782 >seq15 Length=567178 Score = 114 bits (126), Expect = 2e-20 Identities = 257/379 (68%), Gaps = 19/379 (5%) Strand=Plus/Plus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 ||||||||||| ||||||||||||||||| ||||||| || || || ||||| || ||| Sbjct 465332 ATTGACACGATCATGCACTTTGCTGCGCAATCCCATGTTGATAATTCTTTCGGGAATTCG 465391 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | || || | | || ||| | | || || ||||| || || ||| |||||| || Sbjct 465392 ATTGCGTTCAGTAAGACCAATATTTTGGGTACACACGTGCTGCTAGAAGCGGCGAGGATC 465451 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGT 173281 ||||||| || || ||| || | ||| || || || || || ||||| ||| | Sbjct 465452 CATGGCGGGATCAAGAAGTTTATTCACGTGAGCACAGATGAGGTGTATGGCGAAGGCAAT 465511 Query 173282 CTGGGCAAAAAAG----AAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATA 173337 | ||| | | || | | ||| || || || || ||||| ||||| || || Sbjct 465512 ---GCCAACACCGTGGCAATG-CGCGAAGATCATACG---CTTGAGCCCACAAATCCGTA 465564 Query 173338 TGCAGCAGCCAAGGCTGGTGCCGAA-ATGATGGCACGTGCATATCACACATCGTACAAGC 173396 ||| || | || ||||| || ||| | || || | |||||||| || | ||| Sbjct 465565 TGCCGCCACGAAAGCTGGCGCGGAATTTCTTGTCAAG-GCATATCAGCGCTCTTTTCAGC 465623 Query 173397 TAC---CAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAA 173453 | | | || ||| ||||| | ||||| ||||| || |||||||| | || || | Sbjct 465624 TCCCTACTGTGATC---ACGCGGAGTAACAACGTGTACGGACCGCATCAATATCCAGAGA 465680 Query 173454 AAATGATCCCAAAATTTAT 173472 || ||||||| || ||||| Sbjct 465681 AATTGATCCCCAAGTTTAT 465699 >seq8 Length=823571 Score = 89.7 bits (98), Expect = 9e-13 Identities = 193/286 (67%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 176234 CAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACC 176293 |||| ||||||||| || | || | || |||||||| || || | || | || Sbjct 301911 CAGTAATGTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCC 301852 Query 176294 GAATTGTCC-GCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352 |||||| || | || | || || | | || || | ||| ||||||||||| |||| Sbjct 301851 GAATTGACCAGATGGGTACAATAAAGGTAAA-TTGTTGGCACCAACGTAGTCTTGCGCCA 301793 Query 176353 TTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTG 176412 | ||| || | || || ||||| |||||||||||||| | | || |||||| Sbjct 301792 TATTGACAATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTAC 301733 Query 176413 TGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGA 176472 ||| || || |||||||| || |||| |||| ||| |||||||| | | || Sbjct 301732 AGTACCCCGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGA 301673 Query 176473 ACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGG 176518 ||| || || |||||||| || |||||||| | || ||||| Sbjct 301672 ACAAAACTTTTCGCTGCGAAACTTTGAGACCATCAATAACGGACGG 301627 >seq25 Length=441456 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || |||||| |||||| || ||| |||| | || || || ||| Sbjct 69463 CCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACATCC 69522 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||||||| || ||||||||||| || || || ||||||||| Sbjct 69523 AATGTGATGGTCTTGCCCGTGAGGGTTTTCACAAAAATCTGCATT 69567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618828713200