Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 187 5e-42 seq69 134 3e-26 >seq1 Length=1523961 Score = 187 bits (206), Expect = 5e-42 Identities = 553/841 (66%), Gaps = 25/841 (3%) Strand=Plus/Plus Query 42303 TGGTCCATGTACAAGAAGGC----GC-AGTTCTCCAACTGGACCGCCGAGGAGATTGACC 42357 ||| |||||||||||||||| || |||| | |||||||| || || | || Sbjct 464800 TGGGCCATGTACAAGAAGGCCGAAGCGAGTTTT-----TGGACCGCTGAAGAACTGGATT 464854 Query 42358 TGGCCAAGGACACGGCCGGCTGGGAGTCAC--TGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 ||| | ||| | | ||||| ||| || | || |||||| || ||| |||| Sbjct 464855 TGGTGCATGACCTGAAGGACTGGG--TCAAGATGACCGACAACGAACGCTTCTTCATCAA 464912 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | |||| ||||| || ||| || || || || || || ||||| || | | Sbjct 464913 GCACGTCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAA 464972 Query 42476 GTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||| | || ||||| || | | |||||||||||||| ||||| |||||||| |||| Sbjct 464973 TTTCAGTAGTGAAGTGCAAGTGCCT-GAGGCGCGCTGCTTTTACGGATTCCAGATTGCCA 465031 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | || ||| | ||||| || |||||| | || | |||| |||||| || || Sbjct 465032 TTGAAAACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGA 465091 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 |||| || || | || || || || || || ||| | | |||||||| Sbjct 465092 CCGAGAAGGACCACTTGCTACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCA 465151 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| | || ||| ||| | || || | | | || || | | || | Sbjct 465152 GTTGGGCATTGAAGTGGTGCGACTCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCAT 465211 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | || |||||||| |||||||| ||||| ||||| ||||||||||||| | ||| Sbjct 465212 TTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGA 465271 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | | ||||| || |||| |||||||| ||||||||||| | || || ||| Sbjct 465272 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 465331 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | |||||||| ||| | ||| ||| | | | ||| |||||| || || Sbjct 465332 TGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCA---ACAAGCTTCCGGAGT 465388 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 || || | | ||||| || ||||| ||| |||||||| ||| ||| | | | Sbjct 465389 CACGCGTGCACGAAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATT 465448 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTAC 43013 |||| || ||| || | |||||||| | |||| || ||||| ||||||| | | | Sbjct 465449 CGCTCCCTGTGGAATTGATTGGCATGAA-CTCGACGCTGATGTGTCAGTACATTGAATTC 465507 Query 43014 GTCGCCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 || || | | | || ||| | | ||| | | |||||||| | | || Sbjct 465508 TGTGCTGATCGTTTGCTACATGC--GCTTGGTGTATCCAAGATCTACAACGCCAAGAACC 465565 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | || |||| ||||| | ||||| || ||||||||||||| || || |||||||| | Sbjct 465566 CTTTTGACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTG 465625 Query 43132 T 43132 | Sbjct 465626 T 465626 >seq69 Length=184949 Score = 134 bits (148), Expect = 3e-26 Identities = 671/1053 (64%), Gaps = 42/1053 (4%) Strand=Plus/Minus Query 244089 TGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 |||| || | | ||| || || | |||||||| || | ||| | |||| ||| | Sbjct 89947 TGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATG 89888 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||| ||| || | ||||||| ||||| || || ||| || |||||||||| || Sbjct 89887 GCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCA 89828 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCT--CGTTCCAGTC 244266 || ||| ||| | ||| || || | ||| | | |||||| | | ||| | Sbjct 89827 ACAACAGGGAGTTGCGCACACCATGTTTA-----GCG-ACT-TGAGCTTTCAATGCAG-C 89776 Query 244267 CCACATGCCCGAGA---GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCC 244323 ||| || || |||| | | | | || || |||||||| |||||||| | | || Sbjct 89775 CCA-ATCCCAGAGACCAGATGTTGGAGT--GACACCCCACATATCAAACTGGAAGATGCC 89719 Query 244324 CTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-AC 244382 |||||| || ||| ||||||||| || || || || | || || || | | Sbjct 89718 CTTGCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCAT 89659 Query 244383 AGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 || | | || | ||| | ||||| | || || || || |||||||| || || | Sbjct 89658 AGATG-CTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCG 89600 Query 244443 CCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACG 244501 | |||| | | |||||||| ||||| | || || | || |||| || ||||| Sbjct 89599 C-TTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACA 89541 Query 244502 CCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAG 244561 || || || | || | ||||| || || ||| ||||||| || | || || || Sbjct 89540 CCAATACCCACAGGGCGATGTCGTAGATTAGATCGCTTGGCTTCTGGGATCGGATAGTAG 89481 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 ||| || || |||||||| || || | ||| | || || ||| ||| | Sbjct 89480 TTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTC 89421 Query 244622 TGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCG 244681 ||||||| || | | | | | ||| |||| | | || || Sbjct 89420 TGAAAGTTAAACAC------ACCATTGTCGA------------CAAATTTGGACAGTGCA 89379 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 | | |||| |||||| || || || || ||| | ||||||| ||| | ||| | Sbjct 89378 ATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAG 89319 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || | ||||||| | || ||||||| || || ||||| |||||| ||||| || Sbjct 89318 CACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCA 89259 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 ||||||||||||||| | || ||||| |||| ||| ||| | | | | | ||| Sbjct 89258 TCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCAC 89199 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 | | ||||||| ||| |||| ||| ||||| || ||||| |||||||| | Sbjct 89198 AATTGTTGCGCCTTGATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAG 89139 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGCACATGAG 244980 |||||||| || |||||| ||| || || | || | ||||| | || Sbjct 89138 GCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCA-TTAGGGCAGAAAAG 89080 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||||||||||||| | | | || | || |||||| | || |||||||| | ||| | Sbjct 89079 ACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTA 89020 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGT 245099 || || || | | | || || | | ||| |||||||||| |||| || | Sbjct 89019 AAACAGATCACGTGCACGATG-AAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACT 88961 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 |||| |||||| | ||||| ||||||| |||| Sbjct 88960 CAAATACGTCGGCATGCCACGGCTCCAAATAGA 88928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335540685600