Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq31 132 1e-25 seq67 123 6e-23 >seq31 Length=344941 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||||||| | || || |||||||| | || ||||| || || Sbjct 305759 TTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAA 305818 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| | || || ||||| |||||||| || ||| |||||||| Sbjct 305819 AATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTT 305878 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| || ||| || || | |||||| ||||| ||||| || ||||| || Sbjct 305879 GTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCAC 305938 Query 288462 GAATATCTGCATTATGTTATT 288482 ||| ||||||||| | || || Sbjct 305939 GAAAATCTGCATTGTCTTCTT 305959 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||||||| | || || |||||||| | || ||||| || || Sbjct 323568 TTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAA 323509 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| | || || ||||| |||||||| || ||| |||||||| Sbjct 323508 AATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTT 323449 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| || ||| || || | |||||| ||||| ||||| || ||||| || Sbjct 323448 GTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCAC 323389 Query 288462 GAATATCTGCATTATGTTATT 288482 ||| ||||||||| | || || Sbjct 323388 GAAAATCTGCATTGTCTTCTT 323368 >seq67 Length=206978 Score = 123 bits (136), Expect = 6e-23 Identities = 145/192 (76%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | |||||||| || ||||| ||||| || || || |||||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 288346 AGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 ||||| || || |||| || |||||||| || |||||||| ||| || || ||||| Sbjct 178042 AGACGTTGCTG---ATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGC-TTGACGTT 178097 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || | ||| || || |||||||| ||||| || || ||||| ||||| Sbjct 178098 GTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 178157 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 178158 GAAGATCTGCAT 178169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649714560180