Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq69 239 5e-58 seq1 163 3e-35 >seq69 Length=184949 Score = 239 bits (264), Expect = 5e-58 Identities = 1052/1644 (64%), Gaps = 42/1644 (3%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||| || || ||||||| || || | |||||||| | |||||| Sbjct 90246 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 90187 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | || || | ||| | ||||| ||| |||| |||| || || Sbjct 90186 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACC 90127 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 |||||| || |||| ||| | ||| |||| ||||||||||||||| ||| |||| Sbjct 90126 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 90067 Query 113782 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATGGAGCCACCCGCCTTGACC 113839 | ||| || |||| || || | | || | ||||| | |||||||| | | || | Sbjct 90066 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 90012 Query 113840 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 113896 | || | || || || || ||||| ||||| | |||| |||| || |||| Sbjct 90011 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGA 89952 Query 113897 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 113956 | ||| ||||| | ||| ||||| ||||| ||| | || || |||| |||| Sbjct 89951 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTG 89892 Query 113957 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGT 114016 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 89891 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 89832 Query 114017 GCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| | ||| ||| || | ||| | ||| | | | | | || | || |||| Sbjct 89831 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTT-GAGCTTTCAATGCAGCCCA 89773 Query 114076 GTCGTAGTT----GAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 || || || || | | | | ||||||||||||||||| ||| || | | Sbjct 89772 ATCCCAGAGACCAGATGTTGGAGTGACACC-CCACATATCAAACTGGAAGATGCCCTTGC 89714 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG-AGCTC 114190 | || || ||||| | || || || ||||| | ||| || | ||| || | Sbjct 89713 TCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT- 89655 Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 114250 || || | |||| | | |||| || ||||||||| | |||| | | || | Sbjct 89654 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGC 89595 Query 114251 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 114310 || || || | || | | |||||| |||| || | ||||| ||||| | Sbjct 89594 TCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATA 89535 Query 114311 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAATTC 114367 || | |||||||||| | |||||| ||| || || | ||||| | || Sbjct 89534 CCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTAGTTG 89478 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 |||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| | Sbjct 89477 ATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGA 89418 Query 114428 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 114487 | | ||| | | | || |||| | || | || || || ||||||| || Sbjct 89417 AAGTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAGTTG 89364 Query 114488 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAAC 114545 ||||| | | || ||||| |||||||| | | || ||||| || || | Sbjct 89363 CACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAG 89304 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||| Sbjct 89303 CG--AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCA 89246 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG--GCGGC 114663 |||| || || || || || | || | | | ||| || ||| | || | ||| | Sbjct 89245 TGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGCGCC 89187 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 114723 | | | || | ||| |||| | |||||||| ||||| | ||| || || || Sbjct 89186 TTG-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTC 89128 Query 114724 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 114783 |||||| | || | || || | || | || |||||||| ||| ||| | || Sbjct 89127 ATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCC 89068 Query 114784 ACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 | || |||||||||||||| | ||||||||||| | || | || ||||| || Sbjct 89067 GTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACG 89008 Query 114844 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| ||||| || ||||| | ||| |||| || || | | || || Sbjct 89007 TGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGC 88948 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTAC 114960 |||||||| |||| || | || | ||||| || || | |||| | || | || Sbjct 88947 ATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAAC 88888 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || ||| |||| || || || | ||| || | ||||| | || |||||| Sbjct 88887 GTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATT 88828 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 ||| || || || || | || | | | || ||| || || |||||||| Sbjct 88827 TGTACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCC 88768 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 ||||||||| ||||| ||||| | | ||||| || |||| || || || || || || Sbjct 88767 TGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATC 88708 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | | | || | | ||| || |||| |||||||| ||||||||| ||||| || Sbjct 88707 GTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAA 88648 Query 115201 GAGGGTTGGTGTCGCGTGGATGAA 115224 || |||||||| ||||| |||| Sbjct 88647 CAGTGTTGGTGTGGCGTGCGTGAA 88624 >seq1 Length=1523961 Score = 163 bits (180), Expect = 3e-35 Identities = 399/587 (68%), Gaps = 31/587 (5%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || |||||||| ||||| || ||||| || | || | Sbjct 465647 CCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAG 465588 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | ||||| |||||||| | ||| | || | | || |||| | Sbjct 465587 ATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCA 465528 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || | |||||| | | | |||||||||| | ||||| | |||||||| || Sbjct 465527 TGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCA 465468 Query 125927 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCG 125985 || | | ||| ||||||| ||| || ||| |||||||||| ||||| || | Sbjct 465467 ATCAATTCCACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACC 465409 Query 125986 CACGATGGCGTGAATG-GTGTCCACCCCAGGTCTATTG-CGCAAAGTCTTGAAG-AGTTC 126042 | ||| |||| | | ||| | | || | | ||| || || |||| || | || Sbjct 465408 AATGATTTCGTGCACGCGTGACTCCGGAAGCT-TGTTGACG---AG-CTTGGAGTACATC 465354 Query 126043 ---CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 126099 |||| |||| || ||| | || || ||||| |||||||||||||||||| | Sbjct 465353 AAGCACG-CAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACT 465295 Query 126100 CAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAA 126159 || || |||||||| || ||||||||||||||||| || | || || |||||||| || Sbjct 465294 GAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAA 465235 Query 126160 GAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG----AGCGCGACT 126215 |||||||||||| ||| ||| || || || | || |||||| ||| |||||| Sbjct 465234 GAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCG--- 465178 Query 126216 TTGTGTCAAACCACTTCATCGCCC-ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGG 126274 | ||| ||||||||| |||| |||| ||||| || | || |||| ||| | | Sbjct 465177 -CGAGTCGCACCACTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCG 465120 Query 126275 ATCGC---TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 || || | ||| | |||||| || | || ||||||||||| Sbjct 465119 ATAGCACGTAGCAAGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 465076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351285254800