Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq67 100 3e-16 seq31 100 3e-16 seq69 93.3 4e-14 >seq67 Length=206978 Score = 100 bits (110), Expect = 3e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| |||||||| || | | ||||| | ||||| | |||||||| ||| | || Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || || ||||| || |||||||||||||| || || || || |||||||| || || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 64376 A--CTGTATCACCG--GCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 | |||| ||| | ||||| || | || | ||||||||| || | |||||| || Sbjct 178102 ATGCTGT----CCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 178157 Query 64432 GAAAATTTGCATTTTA 64447 ||| || ||||| ||| Sbjct 178158 GAAGATCTGCATCTTA 178173 >seq31 Length=344941 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||| || ||||| ||||| || || Sbjct 305267 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 305326 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||| || || |||| | ||||| || || ||||| Sbjct 305327 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 305386 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||||||||| ||| || | | || || ||||| Sbjct 305387 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 305446 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || ||||| || || || || || ||||| Sbjct 305447 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||| || ||||| ||||| || || Sbjct 324060 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 324001 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||| || || |||| | ||||| || || ||||| Sbjct 324000 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 323941 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||||||||| ||| || | | || || ||||| Sbjct 323940 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 323881 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || ||||| || || || || || ||||| Sbjct 323880 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||||| || ||||| || || || Sbjct 305723 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 305782 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| |||||||| || ||| |||| | ||||| || || ||||| Sbjct 305783 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 305842 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | | || | || || Sbjct 305843 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 305902 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||||||||| | || || |||||||| |||||| Sbjct 305903 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 305951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||||| || ||||| || || || Sbjct 323604 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 323545 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| |||||||| || ||| |||| | ||||| || || ||||| Sbjct 323544 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 323485 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | | || | || || Sbjct 323484 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 323425 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||||||||| | || || |||||||| |||||| Sbjct 323424 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 323376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| | || ||||||||||| || Sbjct 305526 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 305585 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 305586 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 305645 Query 64367 ACA 64369 ||| Sbjct 305646 ACA 305648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| | || ||||||||||| || Sbjct 323801 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 323742 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 323741 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 323682 Query 64367 ACA 64369 ||| Sbjct 323681 ACA 323679 >seq69 Length=184949 Score = 93.3 bits (102), Expect = 4e-14 Identities = 372/571 (65%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 |||||||||||||| || || | ||| || |||| | || | || |||| Sbjct 89375 GACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCAC 89316 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || |||||| | ||||| ||||||| ||||| ||||||||| ||| |||||||| || Sbjct 89315 AAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCC 89256 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||| | ||||| || ||||| ||||| | || | || | ||| ||||| || | Sbjct 89255 TTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAAT--GGCGAACCACA 89198 Query 154767 CT--TCGCGCCTCAA----CTTGACAAGTAAATCGATTTTCGCTCTCATA-TTGTTCGTA 154819 | | |||||| | |||| | | || | | ||| || || ||| | ||| Sbjct 89197 ATTGTTGCGCCTTGATGGTCTTG-CGGGCCAA--GCCCTGGGCT-TCGTACTTGGT-GTA 89143 Query 154820 CAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACC-GGGACAGCGGTCGGGACACA 154878 || || || || || | ||| ||| ||| | | | | ||| || Sbjct 89142 CAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGG---CA 89086 Query 154879 TCAATGA--CCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAA 154936 || || |||| |||| || || || ||||| |||||||| || | ||||| Sbjct 89085 GAAAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACAT 89026 Query 154937 AGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC-GCTTTAAATTCA 154995 ||||| |||| |||||| || | |||| || || ||| | | |||| || Sbjct 89025 GGCGTAAAACAGATCACGTGCACGATGAAGTTCA-TTACCGTGATTCTTCCTCAAATCCA 88967 Query 154996 AAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTT 155055 || ||| ||| |||||| ||||||||||| ||||| | || | || |||||||| | Sbjct 88966 GGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCT 88907 Query 155056 T---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCA 155112 | || |||||||| |||| ||| || | |||| |||| ||||||| || | | Sbjct 88906 TGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAA 88847 Query 155113 CGCCGCTGGCCGTGCCGTTGGTGCCACGTAT 155143 ||| ||| |||||| || || || || || Sbjct 88846 TACCGTTGGACGTGCCATTTGTACCGCGGAT 88816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642863876400