Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq31 113 4e-20 seq69 109 5e-19 seq119 96.9 3e-15 >seq31 Length=344941 Score = 113 bits (124), Expect = 4e-20 Identities = 173/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || |||||||| || |||| | Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| |||||||| | ||||| ||||| ||||| ||||| Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| || |||||||| | ||||| ||| | ||| | ||||| Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGACGGTTCGAC 305902 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 || | || | || |||||||| || || || || ||||||||||| | | ||||| Sbjct 305903 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGTCTTCTTATT 305962 Query 127126 CCTT 127129 ||| Sbjct 305963 GCTT 305966 Score = 113 bits (124), Expect = 4e-20 Identities = 173/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || |||||||| || |||| | Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| |||||||| | ||||| ||||| ||||| ||||| Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| || |||||||| | ||||| ||| | ||| | ||||| Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGACGGTTCGAC 323425 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 || | || | || |||||||| || || || || ||||||||||| | | ||||| Sbjct 323424 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGTCTTCTTATT 323365 Query 127126 CCTT 127129 ||| Sbjct 323364 GCTT 323361 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || || || ||||||||||||||||| | | Sbjct 305040 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 305099 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || | || | || || ||||| ||||| Sbjct 305100 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 305159 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| |||||||| | |||| || | | ||||| | || || Sbjct 305160 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATAGAGTCCGAAGGTTCCAC 305218 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || || || |||||||| Sbjct 305219 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || || || ||||||||||||||||| | | Sbjct 324287 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 324228 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || | || | || || ||||| ||||| Sbjct 324227 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 324168 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| |||||||| | |||| || | | ||||| | || || Sbjct 324167 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATAGAGTCCGAAGGTTCCAC 324109 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || || || |||||||| Sbjct 324108 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 >seq69 Length=184949 Score = 109 bits (120), Expect = 5e-19 Identities = 301/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 145759 CGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTAT---GCTC 145815 |||| ||||||||||||||||| || | || ||||| ||||||||| || || Sbjct 90251 CGCATGTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTC 90192 Query 145816 GACATGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATG 145875 || || | ||| || ||||||| || || || || ||||| ||| ||| Sbjct 90191 AACTTGCTC---ACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATG 90135 Query 145876 AAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTT 145935 | | | | || || || |||| |||| || | |||| || |||||||| | ||| Sbjct 90134 TAGGCACCACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTT 90075 Query 145936 TTAAAGAGATCCTTGACGTGC-TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||||| ||| | || || | | || ||||| || ||| || Sbjct 90074 TTGTACTTTTCCTTGA-TTGCATCAGGAATCGAGCGCACTTTTTGCACCGAGCCACCGTC 90016 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGA 146053 ||| |||| |||||||| || || || | || |||| || | ||| |||| | Sbjct 90015 ATGCAAGATTTGGTTGCGCACCTCAGGTGTCCAGAT-ACCAAGTTCGATGAGCTCCTTCA 89957 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 ||||||||| |||||| | | ||| || || ||||| ||||| | |||| |||| Sbjct 89956 TGAGATACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGG 89897 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 ||||| ||||| | || || || || || | ||||| || |||| || || |||| Sbjct 89896 ACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCA 89837 Query 146174 TGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 || ||||| || || ||||| | ||| || ||| Sbjct 89836 TGGGCGCCAACAACAGGGAGTTGCGCACACCATGT 89802 >seq119 Length=50977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| ||| || ||||| || ||||| ||||||| ||||||||||| || || Sbjct 37837 CAACGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGG 37778 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||||| ||||||||||||| |||| || | | ||||| | ||||| Sbjct 37777 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTG-TCAATCGAGTCCGAAGGCTCGA 37719 Query 127065 CTTCGACGGTCACCGTTTTGCC 127086 | |||| || | ||||| || Sbjct 37718 CGTCGAGCGTGATGGTTTTACC 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498957434400