Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq69 244 1e-59 seq1 140 4e-28 >seq69 Length=184949 Score = 244 bits (270), Expect = 1e-59 Identities = 1059/1648 (64%), Gaps = 50/1648 (3%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||| || || ||||||| || || | ||||| || | |||||| Sbjct 90246 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 90187 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || || | ||| | ||||| ||| |||| |||| || || Sbjct 90186 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACC 90127 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 ||||| || |||| ||| | ||| |||| ||||||||||||||| ||| |||| Sbjct 90126 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 90067 Query 115743 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATAGAGCCACCTGCCTTGACC 115800 | ||| || |||| || || | | || | ||||| | |||||||| | | || | Sbjct 90066 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 90012 Query 115801 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 | || | || || || || ||||| ||||| | |||| |||| || ||| Sbjct 90011 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGA 89952 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 | ||| ||||| | ||| ||||| ||||| ||| | || ||||||| |||| Sbjct 89951 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTG 89892 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 89891 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 89832 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCC-----ACCCCCCTAATGCGTTCCTTGAGGGCG- 116031 |||| | ||| |||||| | ||| | | | | | || ||| || | | Sbjct 89831 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCA 89773 Query 116032 -TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 |||||| | || || | | | | |||||||||||||||||| ||| || | Sbjct 89772 ATCCCAGAG--ACCAGATGTTGGAGTGACAC-CCCACATATCAAACTGGAAGATGCCCTT 89716 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGC 116149 | | | || || ||||| | || ||||| ||||| | ||| || | ||| || Sbjct 89715 GCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGA 89656 Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | || || | |||| | | |||| || ||||||||| | |||| | | || | Sbjct 89655 T-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTT 89597 Query 116210 CGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCG 116268 || || || | || || || | |||||| |||| || | ||||| ||||| Sbjct 89596 GCTCACTTTCGAAGGGGA-ACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCA 89538 Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAA 116325 | || | |||||||||| | |||||| ||| || || | ||||| | Sbjct 89537 ATACCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTAG 89481 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || |||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| Sbjct 89480 TTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTC 89421 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 | | | ||| | | | || |||| | || | || || || ||||||| Sbjct 89420 TGAAAGTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAG 89367 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TG 116503 || ||||| | | || ||||| |||||||| | | || ||||| || || Sbjct 89366 TTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTG 89307 Query 116504 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGA 116563 | ||| ||||||||||| | ||||| ||||| || || ||||||||||||| Sbjct 89306 GAGCG--AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGA 89249 Query 116564 GCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG--GC 116621 |||| || || || || || || | || | | | ||| || ||| | || | || Sbjct 89248 GCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGC 89190 Query 116622 GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAA 116681 | || | | || | ||| |||| | |||||||| ||||| | |||||| || Sbjct 89189 GCCTTG-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAA 89131 Query 116682 CTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATT 116740 || |||||| |||| || | || || | || | || || ||||| ||| ||| | Sbjct 89130 TTCATCACCC-CAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACT 89072 Query 116741 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 116800 || | || || ||||||||||| | ||||||||||| | || | || |||| Sbjct 89071 CGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGAT 89012 Query 116801 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 116860 | || ||| ||||| || ||||| | ||| |||| || || | | | Sbjct 89011 CACGTGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGT 88952 Query 116861 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGT 116917 | || |||||||| |||| || | || | ||||| ||||| | |||| | || | Sbjct 88951 CGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGAT 88892 Query 116918 TTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 116977 || || | || || | || || || || | ||| || | ||||| | || || Sbjct 88891 CAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGC 88832 Query 116978 CATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 ||||||| || || || || | || | | | ||| ||| || || |||| Sbjct 88831 CATTTGTACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATAC 88772 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 ||||||||||||| ||||| |||||| | | ||||| || |||| || || || || | Sbjct 88771 CCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAG 88712 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 | || | | | || | | ||| || |||| |||||||| ||||||||| |||| Sbjct 88711 AATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGT 88652 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 | || || |||||||| ||||| |||| Sbjct 88651 TAAACAGTGTTGGTGTGGCGTGCGTGAA 88624 >seq1 Length=1523961 Score = 140 bits (154), Expect = 4e-28 Identities = 393/583 (67%), Gaps = 23/583 (4%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || |||||||| ||||| || ||||| || | || | Sbjct 465647 CCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAG 465588 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | ||||| |||||||| | ||| | || | | || |||| | Sbjct 465587 ATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCA 465528 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || | |||||| | | | |||||||||| | ||||| | |||||||| || Sbjct 465527 TGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCA 465468 Query 127400 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCG 127458 || | | ||| ||||||| ||| || ||| |||||||||| || || || | Sbjct 465467 ATCAATTCCACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACC 465409 Query 127459 TACGATGGCGTGAATA-GTGTCCACCCCAGGTCTATTG-CGTAAAGTCTTGAAG-AGTTC 127515 | ||| |||| | ||| | | || | | ||| || || |||| || | || Sbjct 465408 AATGATTTCGTGCACGCGTGACTCCGGAAGCT-TGTTGACG---AG-CTTGGAGTACATC 465354 Query 127516 CA-CA-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 | || ||||| || ||| | || || ||||| |||||||||||||||||| | Sbjct 465353 AAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTG 465294 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 ||||| |||||||| || ||||||||||||||||| || | || || || || || ||| Sbjct 465293 AGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAG 465234 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGT 127692 ||||| ||||| ||| ||| || || || | || || ||| ||| ||| | | | Sbjct 465233 AAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC-GCGA 465175 Query 127693 ATCAAACCACTTCATCGCCC-ACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751 || ||||||||| |||| |||| ||||| || | ||||||| ||| | ||| | Sbjct 465174 GTCGCACCACTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCGATAG 465116 Query 127752 C---TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 | | ||| | |||||| || | || ||||||||||| Sbjct 465115 CACGTAGCAAGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 465076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504822659600