Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq69 145 1e-29 seq1 118 2e-21 >seq69 Length=184949 Score = 145 bits (160), Expect = 1e-29 Identities = 452/686 (66%), Gaps = 19/686 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 |||||| ||||| ||||||||||| | |||| || | | | || |||||||| Sbjct 90294 CTTGTCGACCGTAAACTGAATGGCAT---CGGCCTTCGGTCGCCCACGCATGTAGTACAT 90238 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || || || |||| |||| | |||||| || | || |||||||| | Sbjct 90237 GCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTGCTCACCGT 90178 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| | |||||| ||||||||||| |||| |||| || ||||| | Sbjct 90177 CGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATG-TAGGCACCACGATCAG 90119 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | |||| || | | | ||| ||| || |||||||| || ||| || || || Sbjct 90118 CTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTTTCCTTGA 90059 Query 204075 TGTGTTGAGGCACATC-TTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | ||| ||| | ||| | || | |||||| ||| || | | | Sbjct 90058 TTGCATCAGG--AATCGAGCGCACTTTTTGCACCGAGCCACCGTCATGCAAGATTTGGTT 90001 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| ||| || || | ||| |||||| || || | ||||| Sbjct 90000 GCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGATACTTGTTGAC 89941 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| ||| || || | ||||| | || || ||| |||| |||||||| || | Sbjct 89940 GATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAAT 89881 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | || || ||||| || |||||||| || ||||| |||||||| |||| | ||| Sbjct 89880 GGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAG 89821 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTC---GTGCA 204368 ||||||||||||||| | ||| || | || || |||| | | ||| || | | Sbjct 89820 GGAGTTGCGCACACCATGTTTAGCGA-CTTGAGCTTTCAATGCAGCCCAATCCCAGAGAC 89762 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | | || | || |||||||| || ||||| |||||||| | || || ||| || Sbjct 89761 CAGATGTTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGC 89702 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCG 204487 ||| ||| || ||| || || ||| | ||| || || || || || ||||||| Sbjct 89701 CCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAG-TTCCATAGATGCTTCCATGGCT 89643 Query 204488 TGATAGTACATGGTCTCAAAGATCTG 204513 |||||||| || ||||| || || Sbjct 89642 CCATAGTACAGCGTTTCAAAAATGTG 89617 >seq1 Length=1523961 Score = 118 bits (130), Expect = 2e-21 Identities = 547/848 (65%), Gaps = 34/848 (4%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| |||||| || || ||||||||||||| || || || ||||| | | || Sbjct 465627 CACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATCCAGTCAAA 465568 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||| ||| ||| | | || || || ||||| | || || || Sbjct 465567 AGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACGATCAGC-AC 465509 Query 159763 A-AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 | ||||| ||||| ||||||| || |||| || || | || || ||||||| Sbjct 465508 AGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCACAGGGAGCG 465449 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCAC-AATC--TGCGAGACAC 159878 ||| | || |||||||||||| ||| || ||||| ||| | || | ||| Sbjct 465448 AATCCTTGACGAATTCCTTCTCAATCGTGACGGC----GTCACCAATGATTTCGTG-CAC 465394 Query 159879 GTTCGT-ACCCCGG---CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCG 159934 | ||| || |||| |||| | | | | | ||| | |||||||||||| Sbjct 465393 G--CGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGT---ACATCAAGCACGCAAAGTCA 465339 Query 159935 CAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATC 159994 ||||||| || || || ||| ||||| || || || | |||| || ||||||| | Sbjct 465338 CAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGC 465279 Query 159995 CCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCAC 160053 |||||| || | ||| || |||| ||| ||| | | | |||| ||||| ||||| || Sbjct 465278 CCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCCGAAAAGAAGATTCCCTCGAC 465220 Query 160054 GGCCGCAAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATGGGTCCACCT 160110 |||||||| |||| | || ||| || | || ||| | ||| | |||| | Sbjct 465219 AGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTC---GCACCACTT 465163 Query 160111 TTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCT 160170 ||||| |||||||| | | ||| || ||| |||| || | ||| Sbjct 465162 CAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAGCAAGTG 465103 Query 160171 GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTG 160230 ||||| ||| || || ||||| || |||||| |||||||| ||| | ||| Sbjct 465102 GTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTG 465043 Query 160231 CACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCT 160289 | ||||| ||||| ||||| || ||| || | ||||| ||| || ||||| | Sbjct 465042 AATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCT-CAGGCACTTGCACTT 464984 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 | |||| | | || || | || || | ||| ||| ||| |||||||| | Sbjct 464983 CACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACG 464924 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTC 160408 |||| ||||| |||||| | ||| |||| | ||| |||| |||||| || Sbjct 464923 CCAAGACGTGCTTGATGAAGAAGCGTTCG---TTGTCG-GTCATCTTGACCCAGTCCTTC 464868 Query 160409 ACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTAC 160468 | ||| || ||||||| | ||||| ||| ||||| || | || | |||||| Sbjct 464867 AGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTCTTGTAC 464808 Query 160469 ATGGCCCA 160476 |||||||| Sbjct 464807 ATGGCCCA 464800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152118773600