Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq31 134 3e-26 seq67 131 4e-25 >seq31 Length=344941 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| || | || ||||| |||||| | || ||||||||||||||||| Sbjct 305754 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 305813 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | |||||| || || ||| ||| ||||| ||||||||||| |||||| Sbjct 305814 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 305873 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| | ||| | | ||| || ||||||||||| ||||| || ||||| || Sbjct 305874 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 305933 Query 199613 TTCACAAAAATTTG 199626 ||||| ||||| || Sbjct 305934 TTCACGAAAATCTG 305947 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| || | || ||||| |||||| | || ||||||||||||||||| Sbjct 323573 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 323514 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | |||||| || || ||| ||| ||||| ||||||||||| |||||| Sbjct 323513 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 323454 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| | ||| | | ||| || ||||||||||| ||||| || ||||| || Sbjct 323453 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 323394 Query 199613 TTCACAAAAATTTG 199626 ||||| ||||| || Sbjct 323393 TTCACGAAAATCTG 323380 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| |||||||||||||||| ||| ||||| ||| || | |||||| Sbjct 305283 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCT 305342 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| ||||| || | |||||| || || ||| ||| ||||| || Sbjct 305343 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCT 305402 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||||||||||| || | | ||| | | || |||||||| || ||||| Sbjct 305403 TGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTT 305462 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || |||||||| || || Sbjct 305463 TTCCCCGTCAACGTCTTCACAAAGATCTG 305491 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| |||||||||||||||| ||| ||||| ||| || | |||||| Sbjct 324044 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCT 323985 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| ||||| || | |||||| || || ||| ||| ||||| || Sbjct 323984 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCT 323925 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||||||||||| || | | ||| | | || |||||||| || ||||| Sbjct 323924 TGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTT 323865 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || |||||||| || || Sbjct 323864 TTCCCCGTCAACGTCTTCACAAAGATCTG 323836 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | ||||||||| ||| || | ||||| || ||||||||||| Sbjct 305526 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 305585 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||||||||| ||||| || ||| || ||||| || ||||||||||| || Sbjct 305586 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 305645 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| | ||| | | ||| || ||||| ||||| ||||| ||||| | || Sbjct 305646 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTC 305705 Query 199613 TTCACAAAAATTTG 199626 |||||||| || || Sbjct 305706 TTCACAAAGATCTG 305719 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | ||||||||| ||| || | ||||| || ||||||||||| Sbjct 323801 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 323742 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||||||||| ||||| || ||| || ||||| || ||||||||||| || Sbjct 323741 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 323682 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| | ||| | | ||| || ||||| ||||| ||||| ||||| | || Sbjct 323681 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTC 323622 Query 199613 TTCACAAAAATTTG 199626 |||||||| || || Sbjct 323621 TTCACAAAGATCTG 323608 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||||| |||||||| | ||||| ||| |||||| Sbjct 305046 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 305105 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || || || |||||||| || || || ||| ||| ||| Sbjct 305106 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 305165 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| || | | ||| | | ||| |||||||| Sbjct 305166 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 305225 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || ||||| || || || Sbjct 305226 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTG 305263 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||||| |||||||| | ||||| ||| |||||| Sbjct 324281 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 324222 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || || || |||||||| || || || ||| ||| ||| Sbjct 324221 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 324162 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| || | | ||| | | ||| |||||||| Sbjct 324161 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 324102 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || ||||| || || || Sbjct 324101 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTG 324064 >seq67 Length=206978 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | | || | |||||||||| ||||| || || |||| Sbjct 177980 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 178039 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | ||||| ||||| || ||| ||||||||| ||||| ||||||||||| ||| | Sbjct 178040 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 178099 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | ||| || |||| |||||| ||||| ||||| |||||||| || | Sbjct 178100 CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGA 178159 Query 199620 AAATTTG 199626 | || || Sbjct 178160 AGATCTG 178166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916917470770