Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq31 107 2e-18 seq67 104 2e-17 >seq1 Length=1523961 Score = 194 bits (214), Expect = 2e-44 Identities = 410/609 (67%), Gaps = 2/609 (0%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||||||| |||||||| || ||||| || || || | |||||||| || || Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 || | | || |||||||| || || || || | ||| || |||| | ||| |||| Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 465239 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||||| |||||||| ||||| || |||| | || || | | | || | Sbjct 465238 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 465179 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | || ||| || ||||| |||||| | | ||||| || || ||||||| Sbjct 465178 GCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGA 465119 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || | ||| || ||||| || | | ||| ||||| || | || Sbjct 465118 TAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCG 465059 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| ||| ||||| | ||| || ||||| || || || ||||||||||| ||||||| Sbjct 465058 AGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCT 464999 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCG 133305 | ||| |||||||| | |||| | ||| | || |||||||| || || || ||| Sbjct 464998 CAGGCACTTGCACTTCACTACTGAAATTCATCG-CAAGGTTTTCGTTCACAATCCCATCG 464940 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| || || || |||| |||||||||||||| ||| ||||||||| ||| Sbjct 464939 CTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTG 464880 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||| | ||| | || |||| || || |||||||||| ||| ||| Sbjct 464879 ACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCG 464820 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGG 133485 || || |||||||| ||||| |||| | ||| || || || | |||||| || Sbjct 464819 GCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATTT 464760 Query 133486 GGGTTTTCG 133494 ||||| ||| Sbjct 464759 GGGTTCTCG 464751 >seq31 Length=344941 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | ||||| ||||| || || | || || ||| || | Sbjct 305494 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 305435 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || ||||||||| || || || || ||||| | || ||| Sbjct 305434 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 305375 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||| |||| || | ||||| | | |||||| ||| Sbjct 305374 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 305315 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||||||| || |||||||| ||| || | || || Sbjct 305314 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 305268 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | ||||| ||||| || || | || || ||| || | Sbjct 323833 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 323892 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || ||||||||| || || || || ||||| | || ||| Sbjct 323893 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 323952 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||| |||| || | ||||| | | |||||| ||| Sbjct 323953 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 324012 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||||||| || |||||||| ||| || | || || Sbjct 324013 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 324059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | |||||||| | || Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | ||| |||| || | ||||| || || || || | || || Sbjct 305662 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 305603 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || ||||| || || | ||||| | | |||||||||| Sbjct 305602 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 305543 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| |||| |||| ||||| ||||| || | || ||| Sbjct 305542 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 305495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | |||||||| | || Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | ||| |||| || | ||||| || || || || | || || Sbjct 323665 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 323724 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || ||||| || || | ||||| | | |||||||||| Sbjct 323725 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 323784 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| |||| |||| ||||| ||||| || | || ||| Sbjct 323785 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 323832 >seq67 Length=206978 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || |||||||| |||||||| | ||||| || | Sbjct 178172 AAGATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCT 178113 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | |||| | || |||| |||| ||||| || |||||||| | || Sbjct 178112 TCGGACAGCATTGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGA 178054 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || || || | || ||||| || |||| || | ||||| || ||||| Sbjct 178053 TCAGCAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTA 177994 Query 38420 CAACATCCAAAAGG 38433 |||||||||||||| Sbjct 177993 CAACATCCAAAAGG 177980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170861830400