Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq31 116 1e-20 seq6 109 2e-18 seq67 91.5 6e-13 seq46 87.8 7e-12 >seq31 Length=344941 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || ||||| |||||| | ||||| || | || Sbjct 305494 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 305435 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || |||||||| |||||||||||||| |||||||| |||||| Sbjct 305434 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 305375 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || | |||||||| | || ||| || ||||| Sbjct 305374 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 305315 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 305314 ATCCAAAAGGAGTCGACGCTCCACTTGGT 305286 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || ||||| |||||| | ||||| || | || Sbjct 323833 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 323892 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || |||||||| |||||||||||||| |||||||| |||||| Sbjct 323893 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 323952 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || | |||||||| | || ||| || ||||| Sbjct 323953 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 324012 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 324013 ATCCAAAAGGAGTCGACGCTCCACTTGGT 324041 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || ||||| || || || || || || | || || ||| | || Sbjct 305951 AATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 305892 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || || || | || || || ||||| ||||||||||| |||||||||||||| Sbjct 305891 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 305832 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| ||||| | || || || || ||||| || | |||||| || ||||| Sbjct 305831 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 305772 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | ||| | ||||| || Sbjct 305771 TATTCAGAAGGAATCGACATTGCACTTGGT 305742 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || ||||| || || || || || || | || || ||| | || Sbjct 323376 AATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 323435 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || || || | || || || ||||| ||||||||||| |||||||||||||| Sbjct 323436 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 323495 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| ||||| | || || || || ||||| || | |||||| || ||||| Sbjct 323496 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 323555 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | ||| | ||||| || Sbjct 323556 TATTCAGAAGGAATCGACATTGCACTTGGT 323585 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | ||||| ||| | || Sbjct 305266 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 305207 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || || || || || || |||||||| |||||||| |||||| Sbjct 305206 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 305147 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || ||||| || | |||||| ||||| ||| Sbjct 305146 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 305087 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | ||| | ||||| || Sbjct 305086 ATTCAAAAGGAATCGACATTGCACTTGGT 305058 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | ||||| ||| | || Sbjct 324061 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 324120 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || || || || || || |||||||| |||||||| |||||| Sbjct 324121 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 324180 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || ||||| || | |||||| ||||| ||| Sbjct 324181 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 324240 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | ||| | ||||| || Sbjct 324241 ATTCAAAAGGAATCGACATTGCACTTGGT 324269 >seq6 Length=923069 Score = 109 bits (120), Expect = 2e-18 Identities = 266/399 (67%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 |||| |||||||||||| ||||| || | || |||||||| || || ||||| || Sbjct 213139 GTAAGCTATAAAGGTGAAGAAAAAACGTTCACGCCGGAAGAAATCTCGTCAATGGTGCTA 213080 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||| || | || || ||||| || | |||| | || || || Sbjct 213079 ACCAAGATGCGTGAGATCGCCGAGGCTTATATCGGCAAGCAGGTTAAGAACGCTGTGATC 213020 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || ||||| ||||| |||| || ||||| ||||| ||||| || || Sbjct 213019 ACCGTGCCGGCGTATTTTAATGACTCACAGCGACAAGCCACTAAGGATGCTGGGGTCATC 212960 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| || ||||| | || || || || || || || ||||| || | || |||||| Sbjct 212959 GCTGGCTTGAATGTGTTGCGTATGATCAACGAGCCGACCGCAGCAGCGATCGCGTATGGA 212900 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| ||| | || | ||| | || | || | ||||| || || || || Sbjct 212899 -TTGGA----CAAGA-AAGGTGGTGAACACAACGTCTTGATCTTTGACTTGGGAGGTGGT 212846 Query 451511 ACTCATGATACTTCTGTACTTT---CAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 ||| |||| || ||||| |||| ||||| || ||||||| || || || || Sbjct 212845 ACTTTTGATGTGTC---ACTTTTGACAATCGAAGAGGGCATATTTGAGGTCAAAGCCACT 212789 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || ||||| ||| | || |||||||| |||| ||| Sbjct 212788 GCGGGCGATACCCATTTGGGTGGTGAAGACTTTGACAAT 212750 >seq67 Length=206978 Score = 91.5 bits (100), Expect = 6e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || || ||| | || Sbjct 178169 ATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCTTCG 178110 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| || || || ||||||||||||||||| ||||| Sbjct 178109 GACAGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 178050 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || || | || || ||| | |||||||| Sbjct 178049 CAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGG 178012 >seq46 Length=277093 Score = 87.8 bits (96), Expect = 7e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 364653 AAAGTAGCTCAATTAGCAGGTTTTGTATCTGACCGGGTAGCTTATCATCACGGTGAGGCA 364712 || ||||||||||| || || | || || || | |||||||||||||||||| | Sbjct 163153 AAGGTAGCTCAATTGGCTGGCTACGTGTCGGAACACTCTGCTTATCATCACGGTGAGCAA 163094 Query 364713 AG-TTTAATGGGAGCAATAATTGGAATGGCACAAAATTTTGTTGGAAGTAATAATGTAAA 364771 || || || |||| |||| || ||||| ||| ||||||| || || || ||| | | Sbjct 163093 AGCTTGAACGGGA-CAATTATCAACATGGCGCAAGATTTTGTCGGCAGCAACAATATTCA 163035 Query 364772 TTTACTAGAACCAAAAGGACAATTTGGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAG 364831 | | || ||||| || ||||| || | || | ||||| || ||||| |||| || Sbjct 163034 TCTTCTCTCTCCAAACGGCCAATTCGGTACCAGATTGATGGGTGGAAAAGACGCTGCAAG 162975 Query 364832 CCCACGTTATATTTGGACCAAACTTGA 364858 || ||||| || | || ||||| || Sbjct 162974 TCCTCGTTACATCTTCACAAAACTGGA 162948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975710552693480