Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 251 5e-61 seq5 105 5e-17 seq8 87.8 1e-11 >seq6 Length=923069 Score = 251 bits (278), Expect = 5e-61 Identities = 944/1456 (65%), Gaps = 37/1456 (3%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || || || ||| | |||| ||| || | ||||| |||||||| | ||||| ||||| Sbjct 227265 GTCGACTTTTCAACCGCAGACACGTTCAAGATACCGTTGGCATCAATGTCAAAGGTGACA 227206 Query 517304 TCAATTTGAGGGACCCCTCTCTGAG-CA--GGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 || || || || || || | ||| || |||||||| || ||||| || || | ||| Sbjct 227205 TCGATCTGTGGCACACCAC---GAGGCATCGGTGGGATGCCATCCAAGTTGAACTTGCCC 227149 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 517420 | || || || || | |||||||| || || | || || || || Sbjct 227148 AACAAGTTGTTGTCACGGGTCATCGAACGTTCACCTTCAAAGACCTGAATCAACACACCA 227089 Query 517421 GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTT 517479 | || || || | || || | || | |||| || || || ||| | || ||||| Sbjct 227088 GGCTGGTTGTCGGCGTAGGTCGAGAA-AGTCTGCGACTTCTTGGTAGGCACAGTCGTGTT 227030 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 | | || | | ||||||||| |||||| || ||||| |||||||| || | || || Sbjct 227029 ACGGGCGATCAAAGTGGTCATAACACCACCGGCGGTTTCCAAACCAAGCGACAATGGGGT 226970 Query 517540 GACATCAACTAGGACAATATTTTGAAGTTTTTCA--TCAGTT-TGACCAACAAGAATAGC 517596 ||||||| | | | || ||||| |||||| | || | ||| | ||| || Sbjct 226969 CACATCAAGCAACAACAGATCCTGAAGCTTTTCAGATTGGTCGTTACCGCTCAAAATGGC 226910 Query 517597 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGT 517654 || || | || |||||| | |||||||||||||| || |||| | || || | Sbjct 226909 AGCCTGGACAGTAGCACCGAAGGCAACAGCTTCATCGGGGTTAATCGACTTGCAAG--GC 226852 Query 517655 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 517714 | || || ||||| || | ||||| | ||| ||||| || ||||| | ||||| Sbjct 226851 TCCTTGCCGTTGAAGAATTCCGAAAGCAATTGCTGCACCTTGGGGATACGGGTGGATCCA 226792 Query 517715 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 517774 || || | |||| ||| ||||| || || || || || || | || ||| Sbjct 226791 CCGACAAGCACAACTTCGTGCACTTGGCTCTTCGAAAGCTTCGAGTCACGAAGCACCTTT 226732 Query 517775 TCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 517834 || || ||||| | | | || ||||| | || | ||||||||| ||| | Sbjct 226731 TCGACAGGTTCCATGGTCTTGCGGAAGAAGTCGAAGCACATTTCTTCGAAACGAGCACGG 226672 Query 517835 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT-TG 517893 || | || || | |||| || ||||| | || |||| ||| || |||| || Sbjct 226671 GTGATGGTCGAGTTGAAGTCAACACCATCGAAAAGCGAGTCAATTTCGAT-GTAGGCCTG 226613 Query 517894 AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 517953 | ||| || || || | ||| |||||||||||||| || || | || | || | || Sbjct 226612 CGCCGACGACGAAAGCGTACGCTTAGCACGTTCACAGGCAGTACGCAGACGGCGGAGCGC 226553 Query 517954 TTTTGCTGATT-GAT-TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 | || || || | | ||| | | || | |||||| || | || | | Sbjct 226552 ACGT--TGGTTCGACGTGATATCCTTGCGGTGCTTGCGCTTGAATTCCGCGACGAAG--T 226497 Query 518012 GTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 518069 | | || ||||| ||||||||||||||||| ||||| | ||| | || | || || Sbjct 226496 GGTCGACGAGACGGTTATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCCT 226437 Query 518070 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 | |||| ||||| || ||||||| ||| || | ||||| || || ||||| | Sbjct 226436 TCACTTCGAAAATACCTTCTTCAATGCTCAAGAGCGACACATCGAAAGTACCGCCACCAA 226377 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAG 518189 ||| || ||||| || || ||| | | || || || | ||| || |||| || Sbjct 226376 GATCGAAGATAAGCACGTTGCGTTC---GCCACCCTTCTTGTCCAAACCGTAGGCAATAG 226320 Query 518190 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 518249 | |||||||||||||| ||||| || | | || || | ||||||||| || |||| Sbjct 226319 CGGCAGCAGTTGGTTCGTTAATGATACGGAGCACGTTCATACCAGCAATGGCACCGGCAT 226260 Query 518250 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 | || ||||| || | ||| |||||||| ||||| || || || ||||| || |||| Sbjct 226259 CCTTGGTGGCCTGACGTTGAGAATCGTTGAAATAGGCCGGGACGGTAATGACTGCATTCT 226200 Query 518310 TTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATG 518369 | || || |||||||| |||| || || ||||| || | | | ||| || | Sbjct 226199 TAACCTCCTTACCAATGAAAGCTTCAGCGACTTCCTTCATCTTGATGAGGACCATCGACG 226140 Query 518370 AAATTTGTTCTGG--GGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATG 518426 | |||| |||||| |||| | ||| |||| |||| | | || | | || Sbjct 226139 AGATTTCTTCTGGTTGGAACGT--CTTCTCTTCACCCTTGA-AGGTGACAGTGATTTGTG 226083 Query 518427 GTTTATTACCA---ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACAC 518483 |||| | ||| || | || || |||||||||| || ||||| | || || Sbjct 226082 GTTTGTCGCCAGCGCCAGGGGTGACCTTGAATGGCCAGTGCTTGATATCAGCCTGGACGA 226023 Query 518484 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 518543 || ||||| | || | | ||| || || || || |||||||| | || ||| | || Sbjct 226022 TTGGGTCACTGAATTTGCGACCGATCAAACGCTTGGCATCAAAGACCGTGTTGTGCGCAT 225963 Query 518544 TAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 518603 | || || |||| | ||||| ||||| || || ||| |||| || || || || | | Sbjct 225962 TCATGGCGACTTGGTTCTTGGCGGCATCACCGATGAGACGTTCGGTATCGGTGAAAGCGA 225903 Query 518604 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 518663 | || ||||| || || || |||||||| || || || || ||||| || | |||| Sbjct 225902 CGTACGATGGGGTCGTACGGTTACCTTGGTCGTTGGCGATGATTTCCACACGGTCGTTTT 225843 Query 518664 GCCATACACCTACACA 518679 |||| ||||| || || Sbjct 225842 GCCACACACCGACGCA 225827 Score = 150 bits (166), Expect = 1e-30 Identities = 591/917 (64%), Gaps = 18/917 (2%) Strand=Plus/Plus Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 517858 ||||| || | ||| | || || ||| || | |||| ||| ||| | |||||| Sbjct 212526 AACAAATCAGCACATAAATCCTCAAATCGTGCACGCGTAATAGTTGAGTTAAAGTCAATT 212585 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTT 517917 |||||| ||||||| |||| |||||| ||| | || | ||| || | || || || Sbjct 212586 CCTTCGTACAAAGAGTCAATTTCAAT-GTATGCCTGGGCCGATGAGCTCACTGTGCGCTT 212644 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATT-GATTCAAATCT 517975 ||||| ||||| | || | ||| | ||||| | | ||| | | || |||||| Sbjct 212645 GGCACGCTCACAAGAAGTTCGTAGCCGACGTAACGATCGTTGGGCAGTCGA--CAAATCC 212702 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 518035 |||| || || | ||| || || | | | || || ||||| ||||| ||| Sbjct 212703 TTTTTGTACTTGCGCTTAAACTCGCTGGCGAAATACTCGACGAGTCGATTGTCAAAGTCT 212762 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 ||||| ||||| | |||| || | || ||| | || | || | || ||||| | Sbjct 212763 TCACCACCCAAATGGGTATCGCCCGCAGTGGCTTTGACCTCAAATATGCCCTCTTCGATT 212822 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | |||||| | |||||| || ||||| |||| ||||| || | || || ||| Sbjct 212823 GTCAAAAGTGACACATCAAAAGTACCACCTCCCAAGTCAAAGATCAAGACGTTGTGTTCA 212882 Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| | || || | |||||||| | || || || || || || || || || Sbjct 212883 CCACCTT---TCTTGTCCAATCCATACGCGATCGCTGCTGCGGTCGGCTCGTTGATCATA 212939 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | ||| ||||| | ||||| || || ||||| ||||||||||||| ||||| || Sbjct 212940 CGCAACACATTCAAGCCAGCGATGACCCCAGCATCCTTAGTGGCTTGTCGCTGTGAGTCA 212999 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 |||||||| || || || || || || || | | || | || || |||||||| || Sbjct 213000 TTAAAATACGCCGGCACGGTGATCACAGCGTTCTTAACCTGCTTGCCGATATAAGC-CTC 213058 Query 518336 GCCG-TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGC 518392 | || | | ||| || ||| | |||||| || |||| ||| | | ||| || Sbjct 213059 GGCGATCTCACGCATCTTGGTTAGCACCATTGACGAGATTTCTTCCGGCGTGAACGTT-- 213116 Query 518393 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACT 518449 || |||| || ||| ||| | | ||| || | || | | | || Sbjct 213117 TTTTCTTCACCTTTATAGCTTACAACGATTAGTGGCTTGTCGCCAGGACCGCCGGTGACC 213176 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 || |||| ||| | | ||||| || || || | |||| |||| | | ||||| Sbjct 213177 TTGAATGACCAATGTCGAATATCCGACTGTACTTCTGGGTCGCTAAATTTGCGGCCAATA 213236 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | ||| || || ||||| | || ||| | || || || | |||| || || ||| Sbjct 213237 AGTCGCTTGGCGTCAAAGACCGTGTTGTGCGCGTTCATGGCGACCTGATTCTTAGCCGCA 213296 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || ||||||| | |||| || ||||||| || || || ||||| ||||| || || Sbjct 213297 TCACCAATCAATCGCTCTGAGTCGGTAAATGCCACGTAAGAGGGAGTAGTGCGGTTGCCC 213356 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 |||||||| || || || || || | | |||||||||||| || || | ||| Sbjct 213357 TGATCATTGGCGATGATCTCGACGCGGTCGTGTTGCCATACACCAACGCACGAGTAGGTT 213416 Query 518690 GTTCCTAAATCAATACC 518706 || || | ||| ||||| Sbjct 213417 GTCCCAAGATCGATACC 213433 >seq5 Length=944367 Score = 105 bits (116), Expect = 5e-17 Identities = 243/366 (66%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| ||||||||||| ||||| | ||||| || ||| || |||| || Sbjct 604970 ACGCTGATCGAAATCTTCACCACCCAAGTGAGTATCACCGTTCGTGGCCAACACTTCAAA 604911 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | || | |||| || | || || ||||| || ||||| || | |||||| | Sbjct 604910 CACACCGCCATCAATAGCGAGCAGTGTAACATCGAAAGTACCACCGCCAAGATCAAACAC 604851 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| || ||| | || | | || || || | ||| || |||| ||||||||||| Sbjct 604850 AAGCACGTTCTTCTCGCTTTGCGCCTTCTTGTCGATACCGTAGGCAATCGCAGCAGCAGT 604791 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||||| || || || | ||| | | ||| ||||| | || ||||| || || || Sbjct 604790 CGGTTCGTTGATGATACGTTGCACAGTCAAACCGGCAATGGTACCAGCATCCTTGGTAGC 604731 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||| | || | ||| ||||| || ||||| || || | |||||||||| ||||| Sbjct 604730 TTGACGCTGAGCATCATTAAAGTAAGCAGGCACCGTCACAACGGCATCAAACACTTCACG 604671 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379 |||||| || | ||| |||| ||||| || | || | ||| | || | || ||| Sbjct 604670 ACCAATGTAGCCTTCTGCAATTTGCTTCATCTTCGTCAACACCATGGCCGATACTTCTTC 604611 Query 518380 TGGGGA 518385 || || Sbjct 604610 AGGCGA 604605 >seq8 Length=823571 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||||||| |||||| | || || ||||||| || ||||| ||| | || || ||| Sbjct 81416 GGTAAAGAAGGCCGTATTCGTGGCAACCTGATGGGCAAGCGTGTGGATTTTTCAGCTCGT 81357 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 ||||| |||||| | ||||| || |||| | || ||||||| || || | ||| Sbjct 81356 ACAGTCATTACTGCAGATCCAAACATTGAAATTGATCAAGTTGGCGTCCCGCGATCCATT 81297 Query 668975 GCTAAAAATCTTACTTTT 668992 |||| ||||| ||| || Sbjct 81296 GCTATGAATCTGACTGTT 81279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780807016778860