Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq69 206 3e-48 seq1 114 2e-20 seq8 96.9 4e-15 >seq69 Length=184949 Score = 206 bits (228), Expect = 3e-48 Identities = 1050/1643 (64%), Gaps = 48/1643 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| ||||| | || |||||| |||||||| | || Sbjct 88531 CCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTG 88590 Query 111672 TTGGAGACATACGACAAGATGTCCCG-TGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| || || | ||||| | | || | |||| ||||| |||||||| || || Sbjct 88591 CTTGAGACGTATGAGTACATGTCGCTCTCGT-TCTTCACGCACGCCACACCAACACTGTT 88649 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAG 111788 ||||| ||||||||| | || ||| |||| |||||| |||||| || |||| | Sbjct 88650 TAACGCAGGTACACCACGGCCACAACTGTCTTCGTGTTTC-TTATTGGCCATGCAAG-AC 88707 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||||| || | |||||||||| |||||||| |||| || ||||| |||||||| Sbjct 88708 GATTCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCA 88767 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || |||||||| || ||| || | | | || | || || | |||||| Sbjct 88768 GGGGGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTACATCCGCGGTACA 88827 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| || | |||||| | || ||| | || || || || | ||| || || || Sbjct 88828 AATGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTAC 88887 Query 111969 GTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | |||| || ||| ||||| || || | ||| ||||| | ||||| ||||| Sbjct 88888 GTTGATCAAGGTGGTGGCAAGCGCAAAGGGTCGTTTGCAATCTATTTGGAGCCGTGGCAT 88947 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || | | |||||||| || ||| | || || ||| |||| | |||| Sbjct 88948 GCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAATGA-ACTTCATCGTGC 89006 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| || | ||| | ||||| |||||| | ||||||||| | || || | | Sbjct 89007 ACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAA 89066 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 ||| | ||| ||| || || || | | || | ||||| | ||| ||| | ||||| Sbjct 89067 CGGCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGACTGCTG-GGGTG 89125 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGT 112261 | || || || ||| | ||||| |||||||| | | | ||| | || ||| | Sbjct 89126 ATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGC--CCGCAAGACCAT 89183 Query 112262 GCCAGCTGC--CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | || || | || ||||| || ||| | | |||| | ||| || || ||||| Sbjct 89184 -CAAGGCGCAACAAT-TGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGCACACCT 89241 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG---TGTG 112376 || ||||| ||||| || || || || | ||| ||||| | || ||||| | | Sbjct 89242 TACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAAAACTTGGGCACTATT 89301 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 | ||| ||| | || || || | || | ||| ||| || || || Sbjct 89302 CGCTCCAGT---AACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTCGCG 89358 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACAT 112494 ||||| ||| | || || || || || |||| | ||| ||||| | | Sbjct 89359 GTGTGCAACTTGGCGTCCATTGCACTGTCCAAATTTGT--------CGACAATGGTGTGT 89410 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | | | || ||| ||||| | ||||| | ||| || | ||| || |||| || | Sbjct 89411 TTAACTTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCA 89470 Query 112555 TTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 |||||| || | || || | ||| || ||||||| | |||| || || Sbjct 89471 TTGATATCAACTACTATCCGATCCCAGA-AGCCAAGCGATCTAATCTACGACATCGCCCT 89529 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 112673 | ||| | ||||| ||||| | || |||| || ||||| | | | || || Sbjct 89530 GTGGGTATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAA 89589 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||||| ||| | || || || ||||| || |||| | | || | Sbjct 89590 AGTGAGCAAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATG 89649 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || || | ||| | ||| ||| |||| || |||||||| | ||||| || || Sbjct 89650 GAAGCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCT 89709 Query 112794 GCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAGCT----TCACT 112848 | | |||||| ||| || ||||||||||||| || | |||| | || || Sbjct 89710 G-TGAGCAAGGGCATCTTCCAGTTTGATATGTGGG-GTGTCACTCCAACATCTGGTCTCT 89767 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || |||| || | || | | || | | ||| | || ||| || ||| Sbjct 89768 GGGATTGGGCTGCATTGAAAGCTCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGTTGT 89827 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 |||| || |||||||| || || || || || |||||||| |||||||||| | |||| | Sbjct 89828 TGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTGAGC 89887 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 | | |||| | ||||| || | | ||||| || || ||| ||| ||||||| Sbjct 89888 CATTCACGTCCAACATGTACAATCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCAACA 89947 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 || ||||| || | || |||| || ||||| ||||| | || || | | | Sbjct 89948 AGTATCTCATGAAGGAGCTCATCGAACTTGGTATCTGGACACCTGAGGTGCGCAACCAAA 90007 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTG-GATATTCCAGATGAAATTAAGAAG 113147 | || | | ||||| || | ||||| | || | ||||| |||| ||| ||| | Sbjct 90008 TCTTGCATGACGGTGGCTCGGTGCAAAA-AGTGCGCTCGATTCCTGATGCAATCAAGGAA 90066 Query 113148 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 |||| ||||| |||||||||||| |||| || | || |||| || |||||| Sbjct 90067 AAGTACAAAACAGTGTGGGAAATCAAGCAAAAGGTCGTGTTAGATTTGGCAGCTGATCGT 90126 Query 113208 GGTCGCTTCATTGATCAAAGTCA 113230 ||| || ||| |||||| || Sbjct 90127 GGTGCCTACATCTGTCAAAGCCA 90149 >seq1 Length=1523961 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||| |||||| || | || ||||||||| ||| ||||| |||||||| || ||||||| Sbjct 465188 CCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCT 465247 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||| | |||||||| || |||||||| |||||| | ||||| || | Sbjct 465248 TCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATG 465307 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 | || ||| |||||| || || | ||| || |||||| Sbjct 465308 AACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGCG 465348 >seq8 Length=823571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCT-CAAGAAGATTGAT 176076 |||||||| |||||| | ||| || || || |||||| | || | ||| || | | Sbjct 301880 GCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGACCAGATGGGTACAATAAAGGTAA- 301822 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCG-TGTCCGCGAGAGAGACTT 176135 |||||| | ||| | |||||| | ||||| |||||||||| || || || || ||| Sbjct 301821 ATTGTTGGCACCAACGTAGTCTTGCGCCATATTGACAATCGTTGAATGC-AGCGACGCTT 301763 Query 176136 CACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCATC 176194 | |||||||| ||||| | | ||| | ||| | |||| |||||||| || || | | Sbjct 301762 CGCCGTGGTGATACGCTGTGTGCTC-ACTACAGTACCCCGCTAACTGCGCTACCTTGACC 301704 Query 176195 TCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 176254 || | | |||| || | | ||||||| ||| ||| || || |||||| |||||| Sbjct 301703 TCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAAACTTTTCGCTGCGAAACTTTGAGA 301644 Query 176255 CCATC 176259 ||||| Sbjct 301643 CCATC 301639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739994623200