Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq69 223 4e-53 seq1 89.7 6e-13 >seq69 Length=184949 Score = 223 bits (246), Expect = 4e-53 Identities = 1053/1653 (64%), Gaps = 56/1653 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || || || || |||||| ||||| | ||||| || | | ||| Sbjct 90245 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTG 90186 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || || ||||| |||||| ||| |||| | |||| Sbjct 90185 CTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACCA 90126 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 |||||||| |||| || | | |||||| | |||||||| || || |||||| Sbjct 90125 CGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTT 90066 Query 109594 TTCTTGATATCATCGGGAAT-GTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | |||||| |||| ||||| | | | | ||||| | |||||||| | | || || Sbjct 90065 TCCTTGATTGCATCAGGAATCGAGCGCACT-TTTTGCACCGAGCCACCGTCATGCAAGAT 90007 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 | | || ||| | ||||| ||| | | |||| || | | |||| ||| Sbjct 90006 TTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGATACTT 89947 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 |||||| | |||||||||||| || ||| || ||| ||||| | |||| | || Sbjct 89946 GTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGG 89887 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 || | | ||||| ||||| | ||| || ||||| || || || |||||||| |||| Sbjct 89886 CTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAA 89827 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT----GCGTCCCAAT 109888 | || ||| || | ||| | |||| | || || || || |||||| Sbjct 89826 CAACAGGGAGTTGCGCACACCATG----TTTAGCGACTTGAGCTTTCAATGCAGCCCAAT 89771 Query 109889 CATAACGACCACTAAATTTAGTCTCACCATCCCACATATC----TGGTTGAAGTACACCC 109944 | | ||||| | ||| |||| ||||||||| ||| || | | | Sbjct 89770 CCCAGAGACCAGATGTTGGAGTGACACC---CCACATATCAAACTGGAAGATGCCCTTGC 89714 Query 109945 TCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGAT 110004 ||| |||| || |||| | || | || |||| || | ||| || | || Sbjct 89713 TCA----CAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATA 89658 Query 110005 GAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGAC 110064 || || || | || ||| |||| || |||||||| || |||| || | Sbjct 89657 GATGCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCT 89598 Query 110065 TCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACC 110123 | |||| |||||||| | ||| || ||||||||| |||| || | || || ||||| Sbjct 89597 TGCTCACTTTCGAAGGGGA-ACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACC 89539 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG---GGGTAAAA 110180 | ||| | |||||||| | ||||| || || |||| | || || | Sbjct 89538 AATACCCACAGGGCGATGTCGTAGATTAGATCGCTTGGC---TTCTGGGATCGGATAGTA 89482 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| || |||||| || ||||| | |||||| ||||||||||||| | ||| || Sbjct 89481 GTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTT 89422 Query 110241 GTCGTAATCGAACGTTTTCGTCTCC-TTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 | ||| ||| | || || | |||| |||||| || ||||| ||||| | Sbjct 89421 CT-------GAAAGTTAAACACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCA 89369 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTT-- 110357 |||||||| | ||||| ||| ||||| || | | || |||||||| Sbjct 89368 AGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTAC 89309 Query 110358 -GGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTAT 110416 ||| | || || |||||||| | ||||||||| ||| |||||||||||||| | Sbjct 89308 TGGAGCGAATAGTG---CCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGT 89252 Query 110417 AGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGG 110476 |||||||||| || || || ||||| |||| | | | |||||| ||| | || | Sbjct 89251 AGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGT 89193 Query 110477 CG-GCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCT 110533 | || || | ||||| || | || | | |||||||||||||||||| ||| Sbjct 89192 TGCGCCTTGATGGTCTTGCG--GGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCT 89135 Query 110534 CAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 | ||||| | || | || | ||||| |||| | | || ||||| || || Sbjct 89134 CGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCC 89075 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | | || | || || | ||||||||||| || || |||||||| || | || | Sbjct 89074 ACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACA 89015 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 | ||||| |||| ||||| ||| || || | | |||| || || | | Sbjct 89014 GATCACGTGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATA 88955 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCT 110770 || | ||||| || || | ||||| || | || || || || | ||| | | Sbjct 88954 CGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTT 88895 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 | | ||| || || || ||| ||||||| || | | |||||| | ||| || | ||| Sbjct 88894 GATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACG 88835 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 ||||||||||| | || | || | || ||||||| ||| || || || | Sbjct 88834 TGCCATTTGTACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGA 88775 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| || |||||||| || ||| || | |||| || | ||||| || |||| Sbjct 88774 TACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAA 88715 Query 110951 TCGAATCTGCCTTG--TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 | ||||| | |||| | | |||| ||||| || ||||||| || || || || || || Sbjct 88714 TAGAATC-GTCTTGCATGGCCAATAAGAAA-CACGAAGACAGTTGTGGCCGTGGTGTACC 88657 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || || ||||| ||||| || || |||| Sbjct 88656 TGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAA 88624 >seq1 Length=1523961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 328/503 (65%), Gaps = 27/503 (5%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || |||||||| | ||| || |||||||| ||||| || | |||||||| | ||||| Sbjct 465635 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 465576 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAA---CTTGTTTCAGAAGA 119324 |||||||||| || |||| ||| |||| | | ||||| | ||| || | | Sbjct 465575 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 465519 Query 119325 CGATCGGAGACATACT-CGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATT 119383 ||||| | ||| | | | || || | ||||| ||| ||||| || || | ||| Sbjct 465518 CGATCAGC-ACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCA-ATT 465461 Query 119384 ACAC-GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG 119442 ||| ||||| | ||| || ||| | |||||| ||| || || || | ||| Sbjct 465460 CCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 465401 Query 119443 AGTGAATA-GTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCA 119498 ||| | || || || | || ||| | ||| || | || | | ||| Sbjct 465400 CGTGCACGCGTGACTCCGGAAGCTT-GTTG---ACGAGCTTGGAGTACATCAAGCACGCA 465345 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || || | ||||||||| ||| |||||| ||||| ||| | || |||||| Sbjct 465344 AAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGC 465285 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 ||||| || | ||||| | ||| ||||||| || || || ||||||||||| ||| Sbjct 465284 ATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCC 465225 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA------AGGTCGAGACTTGTCGAAC 119672 || ||| || || || || | || |||||| | || || || |||| || Sbjct 465224 TCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGA---GTCGCAC 465168 Query 119673 CACTTGAGAGCCCAGTTGGCCTT 119695 ||||| | ||||| ||||||| Sbjct 465167 CACTTCAATGCCCAACTGGCCTT 465145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973717718000