Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq69 228 1e-54 seq1 136 5e-27 >seq69 Length=184949 Score = 228 bits (252), Expect = 1e-54 Identities = 1115/1740 (64%), Gaps = 68/1740 (4%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| |||||||| |||||| | ||||||||||| | ||||| || | | |||| Sbjct 90245 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTG 90186 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 || ||| || | ||| | |||| || || || ||| || |||| Sbjct 90185 CTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACCA 90126 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGA 105775 || | || |||| ||| | || |||| |||||||||||||||||| ||| Sbjct 90125 CGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTT 90066 Query 105776 TTCTTGATATCATCTGGGATATCTGAG---ATATTTTGAATTGAACCCCCCGCCTTGACC 105832 | |||||| |||| || || ||| | ||||| | || || || | | || | Sbjct 90065 TCCTTGATTGCATCAGGAATC---GAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 90012 Query 105833 ATGAGATCCTT---CATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | || || || | ||| | ||||| | |||| || || | |||| Sbjct 90011 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGA 89952 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | ||||||||| ||| ||| || || ||||| | | || ||||| | |||| Sbjct 89951 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTG 89892 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 | || |||| | |||||||||| |||||||| || || || || || |||||||| || Sbjct 89891 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 89832 Query 106010 GCCATCAAAAGACTGTTACGAAGACCCTTTTC-----CTTGATGCGTTCCTTG-AGAACA 106063 |||| ||| || ||| || | ||| | || ||||| || ||| || || || Sbjct 89831 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCA 89773 Query 106064 -TCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTT 106121 |||||| | || |||| | || ||||||||||||| || ||| ||||| Sbjct 89772 ATCCCAGAG--ACCAGATGTTGGAGTGACAC-CCCACATATCAAACTGGAAGATGCCCTT 89716 Query 106122 GGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACA 106179 | || ||||| ||||| | || ||||| | || | | | || | ||| | | Sbjct 89715 GCTCACAGGGGAG--CCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATA 89658 Query 106180 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 106239 | | || |||| || | | | |||| |||||||| || | |||| || || Sbjct 89657 GAT-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGC 89599 Query 106240 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 106299 || || || || | | | | | |||||| |||| || | ||||| ||||| Sbjct 89598 TTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACC 89539 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAA 106356 | ||| | ||| | ||||| | |||||| |||| | || | ||||| | Sbjct 89538 AATACCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTA 89482 Query 106357 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTT 106416 || | |||||||| ||| |||||| |||| |||||||| |||||||| | || || Sbjct 89481 GTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTT 89422 Query 106417 TTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGATTGATGCCA 106475 | | | | ||| | | | || |||| | |||||| || || || || |||| Sbjct 89421 CTGAAAGTTAAACACACCATTGTC------GACAAA-TTTGGACAGTGCAATGGACGCCA 89369 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTT-- 106533 | ||||| || || || ||||| ||||||||| | | || |||||||| Sbjct 89368 AGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTAC 89309 Query 106534 -GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 ||| | ||| || ||||| || | || || ||| ||||| |||||||||| Sbjct 89308 TGGAGCG---AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGT 89252 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCG- 106651 |||||||||| || || || || || |||| | | | ||| || ||||| || | Sbjct 89251 AGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGT 89193 Query 106652 -GCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 ||| || | |||| ||| ||| |||| || |||||||| ||||| | ||| Sbjct 89192 TGCGCCTTG----ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGC 89137 Query 106708 TTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 || || || |||||| | || |||| | ||||| | || | | || ||||||||| Sbjct 89136 CTCGAATTCATCACCC-CAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGAC 89078 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | || | || || ||||||||||| | ||||| ||||||| || ||| Sbjct 89077 TCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAA 89018 Query 106827 AGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 | ||||| | | || ||| ||| | ||| || || | || || |||||||| Sbjct 89017 ACAGATCACGTGCA-CGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCA 88959 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 106942 | | || || ||||| ||||| | ||||| ||| | || || || || | ||| Sbjct 88958 AATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCA 88899 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 |||||| || || || || ||| | || || || || | ||| || | |||||| | Sbjct 88898 CCTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTG 88839 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCAT 107061 || |||||||| || || || || | || | || | | | || ||| || Sbjct 88838 GACGTGCCATTTGTACCGCGGAT-GTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGAT 88780 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 || |||||||| |||||||| ||||| || || | | | ||||| | || || || Sbjct 88779 GCCGATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCC 88720 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || || || || | |||| | | ||| || |||| || || | |||||| Sbjct 88719 CTCAATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGT 88660 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 107241 ||| || || || || |||||||| ||||| |||| | | ||||| | || || Sbjct 88659 ACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATA 88600 Query 107242 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 ||||| | || | || ||||| |||||||| | || |||||||| | ||| Sbjct 88599 CGTCTCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCAT 88540 >seq1 Length=1523961 Score = 136 bits (150), Expect = 5e-27 Identities = 548/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||||||||| |||||||| || | || || | ||||| Sbjct 465635 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 465576 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAA---CTTGTTTGAGGAGA 117102 ||||||| || ||||| ||||| | || | || |||| | ||| || | | Sbjct 465575 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 465519 Query 117103 CGATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||||| | |||| | | ||||||||| ||||| | |||||||| || || | ||| Sbjct 465518 CGATCAG-CACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCA-ATT 465461 Query 117162 ACAT-GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 || ||||| | ||| || ||| | ||||||||| || || || | ||| Sbjct 465460 CCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 465401 Query 117221 CGTGGATA-GT---TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG--- 117273 |||| | || | ||| || || | ||| || |||| || | || | Sbjct 465400 CGTGCACGCGTGACTCCGGAAGCTTGT---TGACG---AG-CTTGGAGTACATCAAGCAC 465348 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || ||||| || || |||||||| ||||| | || || Sbjct 465347 GCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCA 465288 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||||||||| | || | |||||| || || || |||||||| Sbjct 465287 GGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATT 465228 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAA 117452 ||||| ||| |||||| || |||| || || || ||| ||| || | ||| | Sbjct 465227 CCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGC-AGCGCGCGAGTCGCA 465169 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| |||| |||||| | |||||||| | ||||| | |||| ||| || | Sbjct 465168 CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAG 465109 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572 || || | ||| || | || || |||||| |||||||||| || || ||| Sbjct 465108 CAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTC 465049 Query 117573 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 | |||| ||||| |||||| || || |||| || ||||||| || | Sbjct 465048 GGAGTGAATGTTTTCA--ATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACT 464991 Query 117631 TGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 117690 ||||||||| ||||| | | || || ||||| |||||| ||||| Sbjct 464990 TGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCA 464931 Query 117691 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 117747 ||||| |||| || || ||| ||||| ||| || || ||| |||| |||| Sbjct 464930 AAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCA---TCTTGACCCAG 464874 Query 117748 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTT 117807 || | || || | |||||| | |||||| || |||||| ||| || ||||| Sbjct 464873 TCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTC 464814 Query 117808 TTATA 117812 || || Sbjct 464813 TTGTA 464809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978513824400