Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 >seq1 Length=1523961 Score = 113 bits (124), Expect = 5e-20 Identities = 262/395 (66%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 ||||| |||||||| || | || || ||||| || || ||||| || || ||||| Sbjct 1386905 AATGTGTGTTTGATCCCTGTATCTGCCCATGGTACCAACCCTGCCAGTGCTGTCATGGCT 1386846 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTA 159507 || ||||||||||| | || || | |||||| |||| ||| | ||| ||| | Sbjct 1386845 GGCATGAAAGTTGTGGTCGTAAAATCTGATGAGAATGGTAACGTGGACCGTGTCGATTTG 1386786 Query 159508 GAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCT 159567 || | || | | | | | | |||||| ||||||||||||| ||||| Sbjct 1386785 GAAGAAAAGGTCAAGAAGCACGCCAACGAACTGAGTGCGTTTATGATTACATACCCATCG 1386726 Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGT 159627 || |||||| |||||| | ||||| | || ||| || | | ||| | || Sbjct 1386725 ACGTTTGGTGTGTTTGAAGAAGGCATCAAGGACATGTGTGAGCTCATCCATTCCCACGGC 1386666 Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687 || || || || | || ||||| || | ||||| || ||||| | || || || Sbjct 1386665 GGGCAAGTGTACATGGACGGTGCCAACATGAATGCCCAAGTAGGATTGTGCAACCCTGGT 1386606 Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747 || ||| || ||||| || ||| | || ||||| ||||| ||||| || || || || Sbjct 1386605 AACATTGGCGCGGATGTGTGCCATTTGAATTTACACAAGACTTTCTGCATCCCGCACGGT 1386546 Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 ||||| ||||| || || || |||| ||||| || Sbjct 1386545 GGTGGTGGTCCGGGTGTGGGCTCTATCGGTGTGGC 1386511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048921301600