Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq31 111 1e-19 seq67 84.2 1e-11 >seq31 Length=344941 Score = 111 bits (122), Expect = 1e-19 Identities = 160/219 (73%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||| || ||||||||||| ||||| | || | | || ||| Sbjct 305510 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCAT 305568 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || ||||| ||||| ||||| || || |||||||| ||| | || | || ||||||| Sbjct 305569 CCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGT 305628 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCA-CCGGCC---TCAACATCGACGGTT 34943 | |||||| |||||||| || ||||||| | ||| | || || || | || Sbjct 305629 CTTGAATCTTTTGTTTGAC--AT--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTG 305684 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| | ||||||||||||||||||||| Sbjct 305685 ATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 305723 Score = 111 bits (122), Expect = 1e-19 Identities = 160/219 (73%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||| || ||||||||||| ||||| | || | | || ||| Sbjct 323817 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCAT 323759 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || ||||| ||||| ||||| || || |||||||| ||| | || | || ||||||| Sbjct 323758 CCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGT 323699 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCAC-CGGCC---TCAACATCGACGGTT 34943 | |||||| |||||||| || ||||||| | ||| | || || || | || Sbjct 323698 CTTGAATCTTTTGTTTGAC--AT--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTG 323643 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| | ||||||||||||||||||||| Sbjct 323642 ATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 323604 >seq67 Length=206978 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || || ||||| ||||||||||| | || |||| |||| || || || ||||| || Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || |||||||| ||| | || | || |||||||| ||||| || ||||| | | Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGAC----GTT 178097 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | || || || | || ||||| || ||||| ||||| || || Sbjct 178098 GTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 178157 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 178158 GAAGATCTGCATCTT 178172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632373493680