Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 8e-15 seq38 93.3 3e-13 seq6 91.5 1e-12 seq5 89.7 4e-12 >seq8 Length=823571 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 394030 ATTCATTGCAATAATTTGTGGTAGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGT 394089 |||||| ||||| | | || | || |||| || || |||| |||||||| | || Sbjct 81288 ATTCATAGCAATGGATCGCGGGACGCCAACTTGATCAATTTCAATGTTTGGATCTGCAGT 81347 Query 394090 AATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATTTCCACGAATTCTACC 394149 ||| ||||||||| |||| | ||||||||| || ||||| || || |||||||| | || Sbjct 81348 AATGACTGTACGAGCTGAAAAATCCACACGCTTGCCCATCAGGTTGCCACGAATACGGCC 81407 Query 394150 TTCTTTACCTCGTAATCGT 394168 ||||||||| || || ||| Sbjct 81408 TTCTTTACCACGCAAACGT 81426 >seq38 Length=305916 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || ||||| || || || ||||||||||| || ||||| || ||| Sbjct 256125 ACCGTGCCAGCGTACTTTAACGATTCGCAGCGTCAAGCTACCAAGGATGCCGGTAAGATT 256066 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || | |||| |||||||| || || |||||||| |||||||||||||| || || Sbjct 256065 GCCGGTTTGGATGTGCTTCGTATCATTAACGAACCTACGGCTGCTGCACTTGCGTACGG 256007 >seq6 Length=923069 Score = 91.5 bits (100), Expect = 1e-12 Identities = 355/549 (65%), Gaps = 17/549 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || |||||||| |||||| | | || || Sbjct 213433 GGTATCGATCTTGGGACAACCTACTCGTGCGTTGGTGTATGGCAACACGACCGCGTCGAG 213374 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || ||||||||||| || ||| | |||||||| ||||| || | || || || | Sbjct 213373 ATCATCGCCAATGATCAGGGCAACCGCACTACTCCCTCTTACGTGGCATTTACCGACTCA 213314 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | || |||||||||| || || |||| | | | || | ||| || | Sbjct 213313 GAGCGATTGATTGGTGATGCGGCTAAGAATCAGGTCGCCATGAACGCGCACAACACGGTC 213254 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 ||||| || || || | ||||| | | |||| || | || ||| | ||||| Sbjct 213253 TTTGACGCCAAGCGACTTATTGGCCGCAAATTTAGCGACCCAGAAGTACAGTCGGATATT 213194 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACC--TTATA-TTG-AAGC 550290 |||||| | ||| | | | | |||| || || | || ||| |||| Sbjct 213193 CGACATTGGTCATTCAAGGTCACCGGCGGTCCTGGCGACAAGCCACTAATCGTTGTAAGC 213134 Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348 || | |||| | ||| || ||||| | ||| |||| || || ||||| || Sbjct 213133 TA----TAAAGGTGAAG--AAAAAACGTTCACGCCGGAAGAAATCTCGTCAATGGTGCTA 213080 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAAT 550407 | || ||| | | ||| |||| | | || |||| || ||| | | || || || Sbjct 213079 ACCAAGATGCGTGAGATCGCCGAGGCTTATATCGG-CAAGCAGGTTAAGAACGCTGTGAT 213021 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || ||||||||||||||||| || ||||| ||||| |||||||| || Sbjct 213020 CACCGTGCCGGCGTATTTTAATGACTCACAGCGACAAGCCACTAAGGATGCTGGGGTCAT 212961 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| | ||||| | ||||| ||||| || || || || || || | || ||||| Sbjct 212960 CGCTGGCTTGAATGTGTTGCGTATGATCAACGAGCCGACCGCAGCAGCGATCGCGTATGG 212901 Query 550528 ACTTGATAA 550536 | | || || Sbjct 212900 ATTGGACAA 212892 >seq5 Length=944367 Score = 89.7 bits (98), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || || || ||| || | || | ||||| || | ||| ||||| |||| || | Sbjct 604602 TTCTCGCCTGAAGAAGTATCGGCCATGGTGTTGACGAAGATGAAGCAAATTGCAGAAGGC 604661 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | |||||| ||||| ||||| || | || || || || || |||||||| | Sbjct 604662 TACATTGGTCGTGAAGTGTTTGATGCCGTTGTGACGGTGCCTGCTTACTTTAATGATGCT 604721 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||||||||| || |||||||| ||||| || | | ||| | ||||| ||| Sbjct 604722 CAGCGTCAAGCTACCAAGGATGCTGGTACCATTGCCGGTTTGACTGTGCAACGTATCATC 604781 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| ||||||||||| |||| || || Sbjct 604782 AACGAACCGACTGCTGCTGCGATTGCCTACGG 604813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029279605801900