Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq17 187 2e-42 >seq17 Length=533465 Score = 187 bits (206), Expect = 2e-42 Identities = 404/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 29798 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 29857 |||| ||||| |||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 296629 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 296688 Query 29858 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29917 | || | | || || ||||| || || |||| ||||| | | ||||||||||| Sbjct 296689 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCAACCGTGTGAGCAAGGCGTAGCTGGCGA 296748 Query 29918 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 29977 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 296749 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 296808 Query 29978 CTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCA 30037 | || | || || || ||||| | ||||||| ||||| || ||||| || Sbjct 296809 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 296868 Query 30038 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 30094 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 296869 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 296927 Query 30095 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30152 || | |||| || || |||||||| || ||| || | ||| || || ||| Sbjct 296928 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 296983 Query 30153 GTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 | ||||||| || |||||||| | |||||| ||||| || || ||||| ||||| || Sbjct 296984 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 297043 Query 30213 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30272 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 297044 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 297103 Query 30273 GATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30330 ||| | ||| || |||| | || |||| || ||| || |||| ||||||| Sbjct 297104 GATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGATGAACCAC 297161 Query 30331 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 297162 AGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 297217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616056191630