Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq31 136 3e-27 seq67 114 1e-20 >seq31 Length=344941 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || || || ||| | || | |||| ||| Sbjct 305286 ACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCC 305345 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 305346 AACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTGG 305405 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||||| || ||| | || | || ||| || | ||||| || | ||| | |||||| Sbjct 305406 ATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTC 305465 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||| ||||||||| Sbjct 305466 CCCGTCAACGTCTTCACAAAGATCTGCATG 305495 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || || || ||| | || | |||| ||| Sbjct 324041 ACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCC 323982 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 323981 AACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTGG 323922 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||||| || ||| | || | || ||| || | ||||| || | ||| | |||||| Sbjct 323921 ATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTC 323862 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||| ||||||||| Sbjct 323861 CCCGTCAACGTCTTCACAAAGATCTGCATG 323832 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| ||||||||||| | ||| | | || |||| |||||||| Sbjct 305070 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 305129 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||| |||||||| || ||||| ||||| || || || || || || || Sbjct 305130 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 305189 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | || ||| || | |||||| || | ||||| || ||||| || || || Sbjct 305190 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 305249 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 305250 TTCACGAAGATCTGCAT 305266 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || ||||| || ||| | ||| | | || |||| ||||| || Sbjct 305754 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 305813 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 305814 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 305873 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||| || || | |||| || |||||||| | || Sbjct 305874 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 305933 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || |||||||| || Sbjct 305934 TTCACGAAAATCTGCATTGT 305953 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || ||||| || ||| | ||| | | || |||| ||||| || Sbjct 323573 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 323514 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 323513 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 323454 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||| || || | |||| || |||||||| | || Sbjct 323453 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 323394 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || |||||||| || Sbjct 323393 TTCACGAAAATCTGCATTGT 323374 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| ||||||||||| | ||| | | || |||| |||||||| Sbjct 324257 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 324198 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||| |||||||| || ||||| ||||| || || || || || || || Sbjct 324197 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 324138 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | || ||| || | |||||| || | ||||| || ||||| || || || Sbjct 324137 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 324078 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 324077 TTCACGAAGATCTGCAT 324061 >seq67 Length=206978 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || ||||| || | | || | | |||| ||||||||||| || ||||| ||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | ||| || ||||| || ||||| ||||| || || || || ||||| || || | || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||| || | |||||| || || |||| || ||||| || | |||||| || || Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 101462 ATCTGCAT 101469 |||||||| Sbjct 178162 ATCTGCAT 178169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276902810670