Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq31 118 8e-22 seq25 89.7 4e-13 >seq31 Length=344941 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || || | |||||| || ||||| ||| ||||| || || || || | | || | || Sbjct 305277 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTC-GCTCAACGTGCG 305335 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || ||||||||||| || || || |||| ||||||||||| | |||| || || Sbjct 305336 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTC 305395 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || || ||||| || ||| | | ||| || || | |||||| |||| || Sbjct 305396 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 305455 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| |||||||| || || ||||| |||||||| Sbjct 305456 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || || | |||||| || ||||| ||| ||||| || || || || | | || | || Sbjct 324050 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTC-GCTCAACGTGCG 323992 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || ||||||||||| || || || |||| ||||||||||| | |||| || || Sbjct 323991 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTC 323932 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || || ||||| || ||| | | ||| || || | |||||| |||| || Sbjct 323931 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 323872 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| |||||||| || || ||||| |||||||| Sbjct 323871 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||||||| | | | ||| |||| |||| ||||||||| ||||| Sbjct 305076 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 305135 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || |||||||| ||||| || || || Sbjct 305136 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 305195 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | ||||| |||| || || || || || ||||| || || || Sbjct 305196 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 305255 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 305256 AAGATCTGCAT 305266 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||||||| | | | ||| |||| |||| ||||||||| ||||| Sbjct 324251 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 324192 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || |||||||| ||||| || || || Sbjct 324191 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 324132 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | ||||| |||| || || || || || ||||| || || || Sbjct 324131 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 324072 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 324071 AAGATCTGCAT 324061 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || ||||| ||||| || | || ||| || ||||| ||||| || | | || | || Sbjct 305505 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAACGTGCG 305563 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || || | |||||| || ||||| || || || || ||||| | || | ||| || Sbjct 305564 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 305623 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||||||||| ||| | | | || || |||| || || |||| || Sbjct 305624 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 305683 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || ||||| |||||||| Sbjct 305684 GATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || ||||| ||||| || | || ||| || ||||| ||||| || | | || | || Sbjct 323822 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAACGTGCG 323764 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || || | |||||| || ||||| || || || || ||||| | || | ||| || Sbjct 323763 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 323704 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||||||||| ||| | | | || || |||| || || |||| || Sbjct 323703 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 323644 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || ||||| |||||||| Sbjct 323643 GATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| || || | | | ||| |||| |||| |||||| || ||||| Sbjct 305760 TCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAA 305819 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||||| | |||| || ||||| || |||||| || || || Sbjct 305820 ATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTG 305879 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || |||| || || |||| ||| || || || || || | || || || Sbjct 305880 TCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACG 305939 Query 48756 AAAATCTGCATCGT 48769 ||||||||||| || Sbjct 305940 AAAATCTGCATTGT 305953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| || || | | | ||| |||| |||| |||||| || ||||| Sbjct 323567 TCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAA 323508 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||||| | |||| || ||||| || |||||| || || || Sbjct 323507 ATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTG 323448 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || |||| || || |||| ||| || || || || || | || || || Sbjct 323447 TCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACG 323388 Query 48756 AAAATCTGCATCGT 48769 ||||||||||| || Sbjct 323387 AAAATCTGCATTGT 323374 >seq25 Length=441456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||||||||| || || || ||||| || || || | || Sbjct 69263 AGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 69322 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAA 48660 |||| ||||| ||||| || ||||| ||||| ||||| ||||| | |||| Sbjct 69323 CCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAA 69374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936160770130