Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq69 140 6e-28 seq1 140 6e-28 >seq69 Length=184949 Score = 140 bits (154), Expect = 6e-28 Identities = 487/747 (65%), Gaps = 30/747 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| ||| || ||||| | |||||| | | | ||| | ||| || ||| | || Sbjct 89946 GTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGG 89887 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| ||| || || || |||| ||||| ||||| || || |||||||| |||| Sbjct 89886 CTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAA 89827 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || ||| | ||| || || | ||| |||| | | || ||||| ||| Sbjct 89826 CAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCA--GCCCAATCC 89769 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||||| || || ||| |||||| |||||||| |||||||| ||| Sbjct 89768 CAGAGACCAGAT--GTTGGAGTGA--CACC--CCACATATCAAACTGGAAGATGCCCTTG 89715 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||||| ||| ||||| ||||| || ||||||| |||||| || || || || Sbjct 89714 CTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT 89655 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || | || ||| | ||||| | |||||||| || | | |||| | |||| | || | Sbjct 89654 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAA-TTCTCGCGCT-T 89597 Query 213267 GGGGACGT--GAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | || | |||||| | | |||| | ||| ||||||||| ||| || || || | Sbjct 89596 GCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAA 89537 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGG-TAAAAG 213380 | || | || | |||| || ||||| ||||| || || | || || || Sbjct 89536 TACCCACAGGGCGATGTCGTAGATTAGATCGCTTGG----CTTCTGGGATCGGATAGTAG 89481 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| || |||| |||||| || || | ||| | | || |||| | | || | | Sbjct 89480 TTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTC 89421 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | || ||||| || | | ||||| | | ||| || ||| |||| | Sbjct 89420 TGAAAGTTAAACACA------CCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAG 89367 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || || || | | ||||||||| | || ||| ||||| ||| ||| Sbjct 89366 TTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTG 89307 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAG 213619 | || || ||||||| ||| || || || ||||| ||| | ||| | |||||||||||| Sbjct 89306 GAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTT-GCGATTGCATGCATCCTTGTAGAG 89248 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTG 213646 |||||| || | ||||| || | ||| Sbjct 89247 CATGTAAGGTGTGCCGGTTTCGATCTG 89221 >seq1 Length=1523961 Score = 140 bits (154), Expect = 6e-28 Identities = 551/861 (64%), Gaps = 27/861 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||||||||| || ||||| |||| || ||||| | ||||| Sbjct 465636 GTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCAT 465577 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| | ||| || | | | | || | | | |||| | Sbjct 465576 CCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACG 465517 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| || | | || ||||| | |||| || || ||||||||| || | ||| Sbjct 465516 ATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCAC 465457 Query 48022 GGGCA---AAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || | || |||| || || |||||||| ||| ||||| || || | || | Sbjct 465456 AGGGAGCGAATCCTT---GACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTC 465400 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | ||||| ||||| | | |||||| | | |||||| || | || ||| ||||| Sbjct 465399 GTGCACGCGTGACTCCGGAAGCTTGTTG---ACGAGCTTGGAGTACATCAAGCACGCAAA 465343 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | |||||| ||||| || || |||||||| | || ||||| | |||||||||||| Sbjct 465342 GTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCAT 465283 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || ||| | || || | |||||| || | ||| || || || |||||||| ||||| Sbjct 465282 GAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTC 465223 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCC---GAAAGAAGCGTTCTTGTCTGAGATCCA 48315 || ||||| || || | || || | | || |||| | ||| | ||| Sbjct 465222 GACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTC---GCACCA 465166 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC---GGAA 48372 | ||||| |||||||| | | |||||| || || || || || | | || Sbjct 465165 CTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAGCAA 465106 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 | | | ||| ||| | ||| | || || | | | ||| | ||||| Sbjct 465105 GTGGTCCTT---CTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGC---GAGTACAC 465052 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | || || || || |||||||| ||||| ||| | |||||| ||| Sbjct 465051 TTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCAC 464992 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 |||||||| | ||| || | || || || || || |||||||| ||||| Sbjct 464991 TTGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGC 464932 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||| || | ||| || || | ||| ||| ||||||| ||| | |||| | Sbjct 464931 AAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTC 464872 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | ||| |||| |||||| | ||||| || ||| || || || Sbjct 464871 CTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTCTT 464812 Query 48670 GTACATGCCCCATATGTCCGG 48690 ||||||| |||| | ||||| Sbjct 464811 GTACATGGCCCACACTTCCGG 464791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529190310400