Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 3e-14 >seq2 Length=1125230 Score = 95.1 bits (104), Expect = 3e-14 Identities = 193/284 (68%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 49270 TTCGTTTTGATATGTCAGAGTTTTCGCAAGACCACACTGTATCTAAACTTATTGGTTCAC 49329 |||| |||||||||| |||| | | |||| ||| | || | || |||||| ||| Sbjct 289993 TTCGCATTGATATGTCTGAGTATATGGAAGAACACTCGGTTGCACGGCTGATTGGTGCAC 289934 Query 49330 CTCCTGGATATGTAGGACATGAAACAGGCAATGGTCAGCTTCTTGATAAAGTTGAAC--A 49387 | || || || | ||||| ||| ||| ||||||| | ||| ||| || | Sbjct 289933 CACCCGGCTACATTGGACACGAAGAAGG---TGGTCAGTTGACTGAGGCTGTTCGACGGA 289877 Query 49388 ATTCCCTAATGCAGTACTTCTACTGGATGAAATTGAAAAAGCACATCCAAAAGTACTGCT 49447 || ||| || || |||| ||||||||||||||||||| |||||||| || ||| Sbjct 289876 AT--CCTTATAACGTGATTCTGATGGATGAAATTGAAAAAGCTCATCCAAAGGTGCTGAA 289819 Query 49448 GACATTCCTACAAGTATTGGATGAAGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTA 49507 | || || ||| | ||||| || || ||| | || | ||| || |||| |||||| | Sbjct 289818 CATTTTGCTCCAACTTTTGGACGATGGACGTCTTACGGATTCGCATGGAAGAACAGTCGA 289759 Query 49508 CTTCAATAATATTACTGTTATTATGACTACAAACCTTGGAGCAG 49551 ||| ||| | ||| || ||||| | ||| |||| |||| Sbjct 289758 CTTTTCAAATGTAGTTGTCATCATGACGTCTAACATTGGGGCAG 289715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106453205288720