Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-28 seq31 113 3e-19 seq5 113 3e-19 seq67 102 5e-16 seq119 87.8 1e-11 >seq6 Length=923069 Score = 143 bits (158), Expect = 2e-28 Identities = 364/549 (66%), Gaps = 11/549 (2%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||| ||| | || || || ||| || || | ||| |||||||| | || ||| Sbjct 225800 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGTGTGTGGCAAAACGACCGTGTGGAA 225859 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || ||||| ||||||||||| | || || ||||| || || |||| || || || Sbjct 225860 ATCATCGCCAACGACCAAGGTAACCGTACGACCCCATCGTACGTCGCTTTCACCGATACC 225919 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| || || ||||| || || | |||| || ||| | || || | Sbjct 225920 GAACGTCTCATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAATGCGCACAACACGGTC 225979 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| || | ||||| ||||| || || ||| | | ||||| ||||||| Sbjct 225980 TTTGATGCCAAGCGTTTGATCGGTCGCAAATTCAGTGACCCAATCGTCCAGGCTGATATC 226039 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGCAA-- 474629 || ||||| || ||||| | || | ||| |||||| | || | | Sbjct 226040 AAGCACTGGCCATTCAAGGTCACCCCTGGCGCTGGCGACAAACCACAAATCACTGTCACC 226099 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | |||||| || || ||| ||| |||| || || ||||| | || Sbjct 226100 TTCAAG--GGTGAAGAGAAGACGTTCCAACCAGAAGAAATCTCGTCGATGGTCCTCATCA 226157 Query 474690 AAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 | ||||| || ||| |||| || ||| | || || | ||||||| ||||| Sbjct 226158 AGATGAAGGAAGTCGCTGAAGCTTTCAT--TGGTAAGGAGGTTAAGAATGCAGTCATTAC 226215 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || ||||| || |||||||||||||| || || || ||||| || ||||| Sbjct 226216 CGTCCCGGCCTATTTCAACGATTCTCAACGTCAGGCCACCAAGGATGCCGGTGCCATTGC 226275 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||| | || || | ||||| ||||| |||||||| || ||||| |||| || ||| | Sbjct 226276 TGGTATGAACGTGCTCCGTATCATTAACGAACCAACTGCTGCCGCTATTGCCTACGGTTT 226335 Query 474868 TGATAAGAA 474876 || ||||| Sbjct 226336 GGACAAGAA 226344 Score = 89.7 bits (98), Expect = 3e-12 Identities = 357/554 (64%), Gaps = 21/554 (4%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||| ||| | || || || ||| || || | ||| |||||| | | || || Sbjct 213433 GGTATCGATCTTGGGACAACCTACTCGTGCGTTGGTGTATGGCAACACGACCGCGTCGAG 213374 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || |||||||| || || || | || || || || || || | ||||| || | Sbjct 213373 ATCATCGCCAATGATCAGGGCAACCGCACTACTCCCTCTTACGTGGCATTTACCGACTCA 213314 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | | ||||| ||||| ||||| |||| | || || | || || | Sbjct 213313 GAGCGATTGATTGGTGATGCGGCTAAGAATCAGGTCGCCATGAACGCGCACAACACGGTC 213254 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||| || || || | ||||| || || ||| || | || || || ||||| Sbjct 213253 TTTGACGCCAAGCGACTTATTGGCCGCAAATTTAGCGACCCAGAAGTACAGTCGGATATT 213194 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAG----AAGC 474627 || |||||| | || ||||| | | | ||| || ||| || | |||| Sbjct 213193 CGACATTGGTCATTCAAGGTCACCGGCGGTCCTGGCGACAAGCCACTAATCGTTGTAAGC 213134 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCAC--CGGAACAAATTTCTTCAATGGTTTTA 474685 ||| | |||||| ||| || ||||| ||||| |||| || |||||||| || Sbjct 213133 TATAAA----GGTGAAG--AAAAAACGTTCACGCCGGAAGAAATCTCGTCAATGGTGCTA 213080 Query 474686 GCCAAAATGAAACAAACCGC-GAG-CTCATATCTTGGACAAGAAG-TAACTGATGCAGTA 474742 |||| ||| | | ||| ||| || ||||| | |||| || | | | || || Sbjct 213079 ACCAAGATGCGTGAGATCGCCGAGGCTTATATC---GGCAAGCAGGTTAAGAACGCTGTG 213023 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || || || ||||||||||| || || || ||||| ||||| ||||| || Sbjct 213022 ATCACCGTGCCGGCGTATTTTAATGACTCACAGCGACAAGCCACTAAGGATGCTGGGGTC 212963 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || | ||||| || ||||| || || || || || ||||| || | || ||| Sbjct 212962 ATCGCTGGCTTGAATGTGTTGCGTATGATCAACGAGCCGACCGCAGCAGCGATCGCGTAT 212903 Query 474863 GGTCTTGATAAGAA 474876 || | || ||||| Sbjct 212902 GGATTGGACAAGAA 212889 >seq31 Length=344941 Score = 113 bits (124), Expect = 3e-19 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 305567 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTT 305626 Query 480677 GTCTTGAATCTTTTGTTTGACA 480698 |||||||||||||||||||||| Sbjct 305627 GTCTTGAATCTTTTGTTTGACA 305648 Score = 113 bits (124), Expect = 3e-19 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 323760 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTT 323701 Query 480677 GTCTTGAATCTTTTGTTTGACA 480698 |||||||||||||||||||||| Sbjct 323700 GTCTTGAATCTTTTGTTTGACA 323679 Score = 102 bits (112), Expect = 5e-16 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||||||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 305796 TCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTA 305855 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || |||||||| || || || || || ||| | || || | || | || | Sbjct 305856 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG--TCCAACGTGA 305913 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| |||||||| || Sbjct 305914 TGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTG 305947 Score = 102 bits (112), Expect = 5e-16 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||||||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 323531 TCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTA 323472 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || |||||||| || || || || || ||| | || || | || | || | Sbjct 323471 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG--TCCAACGTGA 323414 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| |||||||| || Sbjct 323413 TGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTG 323380 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | || | ||| ||| || || ||| |||||| | ||| Sbjct 305046 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 305105 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| || ||||| || |||||||| |||||||||||||| |||||||| ||| Sbjct 305106 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 305165 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAG 480708 |||||||| || ||||| || || || ||||||| Sbjct 305166 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAG 305202 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | || | ||| ||| || || ||| |||||| | ||| Sbjct 324281 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 324222 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| || ||||| || |||||||| |||||||||||||| |||||||| ||| Sbjct 324221 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 324162 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAG 480708 |||||||| || ||||| || || || ||||||| Sbjct 324161 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAG 324125 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||||| ||||| | ||| |||||||| |||||||| |||||||| Sbjct 305339 ATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTT 305398 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||||| || ||||| || ||| ||||||| || | | | | | | ||| |||| Sbjct 305399 ATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAA-AGTAA 305457 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || | ||||| || || || || Sbjct 305458 TCGTTTTCCCCGTCAACGTCTTCACAAAGATCTG 305491 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||||| ||||| | ||| |||||||| |||||||| |||||||| Sbjct 323988 ATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTT 323929 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||||| || ||||| || ||| ||||||| || | | | | | | ||| |||| Sbjct 323928 ATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAA-AGTAA 323870 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || | ||||| || || || || Sbjct 323869 TCGTTTTCCCCGTCAACGTCTTCACAAAGATCTG 323836 >seq5 Length=944367 Score = 113 bits (124), Expect = 3e-19 Identities = 268/398 (67%), Gaps = 8/398 (2%) Strand=Plus/Plus Query 475788 GTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAG 475847 |||| || ||||| |||||||| || || || |||||||| |||| | ||| || | Sbjct 605347 GTGTGAACCCTGACGAAGCTGTCGCCTACGGTGCTGCTGTGCAAGGTGGTATCTTGGGTG 605406 Query 475848 GTCAATCAGACGA-GAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTA 475906 || || ||| || | || ||| | | | || |||| || |||||||| | Sbjct 605407 GTGAAGAAGATGACGTGACCAAAGGCT-TGCTGCTCATTGATGTGGTGCCACTTTCGCAA 605465 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 ||| ||||||| || || || | |||||||| | || || | || ||| ||||| Sbjct 605466 GGTATTGAAACTGTGGGTGGTGTCATGACTAAGTTGATCAACCGCAACACTGTCATCCCC 605525 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 ||| || || || || || || || ||||| ||| | |||| |||||| Sbjct 605526 ACCAAGAAGTCGCAAACGTTCTCGACCTACCAAGATAACCAACCTGCTGTGTTGATCCAA 605585 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATC 476084 | || ||||||||| | | |||||||| || ||||| || ||| ||| Sbjct 605586 GTGTTCGAAGGTGAACGTGCCATGACTAAAGACAACCGTCT-CTTGGGCAAGTTTGAAT- 605643 Query 476085 TTGAAGGTA-TTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 ||| | | ||||||| ||||| | || || ||||| |||||||| || ||||| ||| Sbjct 605644 -TGACCGGACTTCCTCCAGCTCCACGTGGTGTGCCTCAGATTGAAGTGACGTTTGAAATT 605702 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| |||||||||||| | || ||||| ||||| Sbjct 605703 GATGCCAATGGTATTCTTCAGGTGTCTGCTGAAGATAA 605740 >seq67 Length=206978 Score = 102 bits (112), Expect = 5e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||| |||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 178014 ATCTTCCAATTGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTT 178073 Query 480677 GTCTTGAATCTTTTGTTTGAC 480697 ||| || |||||||| ||||| Sbjct 178074 GTCCTGGATCTTTTGCTTGAC 178094 >seq119 Length=50977 Score = 87.8 bits (96), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||| |||||||| || | ||| || ||||| || |||||||||||||| Sbjct 37825 ATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTT 37766 Query 480677 GTCTTGAATCTTTTGTTTGAC 480697 ||| ||||| || || ||||| Sbjct 37765 GTCCTGAATTTTCTGCTTGAC 37745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165902595880