Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq69 217 2e-51 seq1 136 5e-27 >seq69 Length=184949 Score = 217 bits (240), Expect = 2e-51 Identities = 1113/1744 (64%), Gaps = 58/1744 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| ||||||| ||||| | |||||||| ||||| || | || Sbjct 88531 CCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTG 88590 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| || || | ||||| | | |||| ||||| |||||||| || || Sbjct 88591 CTTGAGACGTATGAGTACATGTCGCTCTCGTTCTTCACGCACGCCACACCAACACTGTTT 88650 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||||||| | || || |||| || ||| | | |||| | || || Sbjct 88651 AACGCAGGTACACCACGGCCACAACTGTCTTCGTGTTTCTTATTGGCCATGCAAGACGAT 88710 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || | || || || | ||||| | | | || || ||||| |||||||| ||| Sbjct 88711 TCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGG 88770 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 75510 ||||| || || ||| || | | | || | || | || || || || ||||| Sbjct 88771 GGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTAC-ATCCGCGGTACAAA 88829 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || | |||||| | || ||| | || || || || | ||| || || || || Sbjct 88830 TGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGT 88889 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 |||||| || | ||||| ||||| | || |||| ||||| || |||||||| Sbjct 88890 TGATCAAGGTGGTGGCAAGCGCAAAGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGC 88949 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA- 75686 ||| | | |||||||| || || | || || ||| | ||| ||| || | Sbjct 88950 CGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAATGAACTTCATCG-TGCAC 89008 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | ||||| |||| || ||||||| ||||| | ||||||||||| || || | | Sbjct 89009 GTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACG 89068 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAG 75805 | | ||| ||||||||| || | | || | ||||| | |||| || | |||||| Sbjct 89069 GCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGACTGCTG-GGGTGAT 89127 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCA 75865 || || || ||| | ||||| ||||| |||| |||| ||| ||| | | | Sbjct 89128 GAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCCCGCAAGACCAT-CAA 89186 Query 75866 GCCGC--CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 | ||| | || | ||| || ||| | | | |||| || || || ||||| || | Sbjct 89187 GGCGCAACAAT-TGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGCACACCTTACA 89245 Query 75924 TGCTTTACAAGGATGCTTGTAA---CAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 |||| ||||||||||| || || |||| || | | ||| || ||||| || || Sbjct 89246 TGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAA---AACTTGGGCACTAT-- 89300 Query 75981 AGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 |||| | | ||| ||| || | | ||||||||| ||||| || || | Sbjct 89301 -TCGCTCCAGTAACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTCGCGG 89359 Query 76038 TTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 | ||||| ||||| || || || || |||||| | |||| || | | | ||| Sbjct 89360 TGTGCAACTTGGCGTCCATTGCACTGTCCAAA-TTTGTC------GACAATGGTGTGTTT 89412 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 | | | | || || | |||||||| |||||||| |||| |||||| ||| |||||| Sbjct 89413 AACTTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCATT 89472 Query 76157 GACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || | || | ||||| | || | |||| |||||| | ||||| | ||| Sbjct 89473 GATATCAACTACTATCCGATCCCAGAAGCCAAGCGA---TCTAATCTACGACATCGCCCT 89529 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGAT 76273 | ||| | ||||| ||||| | || |||| |||||| | | | | | || || Sbjct 89530 GTGGGTATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAA 89589 Query 76274 TCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 || |||| || |||| | || |||||||| |||| | | | || || Sbjct 89590 AGTGAGCAAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATG 89649 Query 76334 GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || || | ||| | || | | | || | ||||| || | ||||| || || Sbjct 89650 GAAGCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCT 89709 Query 76394 GCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGA 76452 | | |||||| ||| |||||||||||||||| || | |||| || | Sbjct 89710 GTG-AGCAAGGGCATCTTCCAGTTTGATATGTGGG-GTGTCACTCCAACATCTGGT--CT 89765 Query 76453 CTGGGA-TGTTCT-CAAGGAACGCATCAAG-----GAGAAGGGTCTTCGTAACAGTCTTT 76505 |||||| || || || ||| || ||||| | | ||| | || ||| || | Sbjct 89766 CTGGGATTGGGCTGCATTGAAAGC-TCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGT 89824 Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 76565 || |||| || |||||||| || || || || || |||||||| |||||||||| | ||| Sbjct 89825 TGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTG 89884 Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625 | |||| ||| | ||||| ||| | | ||||| ||||| ||| || |||| Sbjct 89885 AGCCATTCACGTCCAACATGTACAATCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCA 89944 Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685 ||||| | ||| | || || |||| | ||||| ||||| | || || | | Sbjct 89945 ACAAGTATCTCATGAAGGAGCTCATCGAACTTGGTATCTGGACACCTGAGGTGCGCAACC 90004 Query 76686 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT---CTCAGATATCCCAGATGATATCA 76742 || || | | ||||| || | ||||| | ||| || || |||| |||| Sbjct 90005 AAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTC---GATTCCTGATGCAATCA 90061 Query 76743 AGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAG 76802 || | ||| |||||||||||||||||| || | || | || |||| || | Sbjct 90062 AGGAAAAGTACAAAACAGTGTGGGAAATCAAGCAAAAGGTCGTGTTAGATTTGGCAGCTG 90121 Query 76803 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGA 76862 |||||||| || ||| |||||| || |||| | ||| | || ||| Sbjct 90122 ATCGTGGTGCCTACATCTGTCAAAGCCAGTCGCTGAACGTGCACATCGCCGACCCGACGG 90181 Query 76863 TGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGT 76922 || |||| | | || ||||| | ||||||||||| | || || || ||||| |||| Sbjct 90182 TGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACTTAAGACCGGCATGT 90241 Query 76923 ACTA 76926 |||| Sbjct 90242 ACTA 90245 >seq1 Length=1523961 Score = 136 bits (150), Expect = 5e-27 Identities = 548/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Plus Query 64690 TATAAAAAGGCTCAAATGAGCAATTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTT 64749 || || ||||| || ||| |||||| || |||||| | |||||| | || || Sbjct 464809 TACAAGAAGGCCGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTG 464868 Query 64750 GACGACTGG---AAGACCCTGAATGAAAATGAAAAGAAATTCATAAAGTACATCCTGGCA 64806 | |||||| |||| ||| || || ||| ||||| ||| || || |||| Sbjct 464869 AAGGACTGGGTCAAGA---TGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCG 464925 Query 64807 TTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAA 64866 |||||||||| |||||| ||||| || || | | ||||| |||| Sbjct 464926 TTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCAGTAGTGAA 464985 Query 64867 GTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCAA--TGCCATAATGAAATGGTTC 64924 ||||| | || ||||||| || |||| || || |||||| ||||| ||| Sbjct 464986 GTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCAT--TGAAAACATTC 465043 Query 64925 ATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGC 64984 | |||| || || |||||||||| |||||| || || | || ||| | | Sbjct 465044 ACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACC 465103 Query 64985 AGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGA 65044 | || | || ||| |||| | ||||| | |||||||| | |||||| ||| Sbjct 465104 ACTTGCTACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGA 465163 Query 65045 AATGGTTTGACACAAAGTCTCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTG 65103 | |||| ||| | || ||| ||| || || || |||| || |||||| ||| Sbjct 465164 AGTGGTGCGACTCGCGCGCT-GCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTC 465222 Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 ||||| |||||||| || || || |||||| | || | |||||||||||||| || ||| Sbjct 465223 GAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTC 465282 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAG 65223 ||||| || || | ||||| |||||||| || || ||||| || | ||| || Sbjct 465283 ATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGAC 465342 Query 65224 TTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA---AC-TAT 65276 ||||| | || | || |||| || ||| | || || ||| | || | Sbjct 465343 TTTGCGTGCTTGATGTACTCCAAG-CT---CGTCA---ACAAGCTTCCGGAGTCACGCGT 465395 Query 65277 CCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCC 65336 |||| ||| | || || || ||||||||| | ||| || ||| | ||||| Sbjct 465396 GCACGAAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATTCGCTCCC 465455 Query 65337 -ATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTG-AGTATGTGTCG 65394 || ||| | || || |||||||| | ||||| ||||||||| | | |||| | Sbjct 465456 TGTGGAAT-TGATTGGCATGAACTCGACGCTGATGTGTCAGTACATTGAATTCTGTG-CT 465513 Query 65395 GATCGTCTCCTCAAACAAG---TTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTT 65451 |||||| | || ||| | |||| || | || | ||||| ||||| || ||| Sbjct 465514 GATCGTTTGCT---ACATGCGCTTGGTGTATCCAAGATCTACAACGCCAAGAACCCTTTT 465570 Query 65452 GACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGG 65511 |||| ||||| | || || | || |||||||| |||||||||||||| || || Sbjct 465571 GACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTGGGT 465630 Query 65512 GACTA 65516 || || Sbjct 465631 GAATA 465635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567288292800