Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 163 4e-34 seq47 104 4e-16 >seq1 Length=1523961 Score = 163 bits (180), Expect = 4e-34 Identities = 235/329 (71%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||| | ||| || || | ||| || |||||||| || |||||| Sbjct 465329 CCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGCCCACGCTTC 465270 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||||| ||||| || ||||| |||||||| || ||||| Sbjct 465269 TTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGACAGCCGCAAAT 465210 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAG--GCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | | ||| || ||| | | ||| || | | || | |||||||| |||| Sbjct 465209 GCCAAAATCCGTTCAGCATAGG----CAGCAGCGCGCGA-GTCGCACCACTTCAATGCCC 465155 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | ||||| || |||| | || | || ||||| || || | | ||||||||||| Sbjct 465154 AACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAGCAAGTGGTCCTTCT 465095 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || |||||| |||| ||| ||||| || | |||||||| || ||||| ||||||| Sbjct 465094 CGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGAATGTTTT 465035 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||| |||||||| || ||||||||| Sbjct 465034 CAATGGCAATCTGGAATCCGTAAAAGCAG 465006 Score = 120 bits (132), Expect = 5e-21 Identities = 223/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| || || ||||| ||| ||| || || ||||||||||||| || Sbjct 465650 ACGCCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGT 465591 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||||| || ||||| | ||| |||| ||| || | Sbjct 465590 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTT--GTAGATCTTGGATACACCAA 465533 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| |||| || || || ||||||||||||||| ||||| || | | ||||| Sbjct 465532 GCGCATGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCA 465473 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| || | |||| || ||||| || |||| || || ||||| ||| |||||| | Sbjct 465472 TGCCAATCAATTCCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGT 465413 Query 794131 CGATGATGATCTGCCTGGGCACGTCGGACGACG---GCTTGTCGACGAGCATCGTGTAGA 794187 | ||||| | | ||||| ||| || |||||| ||||||| | | ||| | Sbjct 465412 CACCAATGATTT---CGTGCACGCGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGTACA 465356 Query 794188 GCAGGCAGGCAAAGTCGCAATGCA 794211 || ||| |||||||| || |||| Sbjct 465355 TCAAGCACGCAAAGTCACAGTGCA 465332 Score = 95.1 bits (104), Expect = 2e-13 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 || ||||| || ||| || || |||||||| || || || || | |||||||||||| Sbjct 464966 GCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATG 464907 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTC-GGCGCCGAGGTCGAC 796304 ||| || |||| |||| | | | |||||||| | ||| || || | || | Sbjct 464906 AAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTCAGGTCATGCACC-AAATCCAG 464848 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA--TCCGTTGG 796362 || || ||||||||||| || |||||||| |||||||| |||| | |||| | Sbjct 464847 TTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTCTTGTACATGGCCCACACTTCCG--GC 464790 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCG 796401 | |||| ||||||| ||||| ||||| ||||||||| Sbjct 464789 TCTTGGATTGGGAACAACACAAATCGATTTGGGTTCTCG 464751 >seq47 Length=273717 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || ||||||||| | |||| ||| || ||| Sbjct 124836 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTCGCCAATTCACCAGGCA 124895 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 124896 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 124952 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 124953 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 125012 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 125013 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 125072 Query 1485707 TGTA 1485710 |||| Sbjct 125073 TGTA 125076 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || ||||||||| | |||| ||| || ||| Sbjct 203929 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTCGCCAATTCACCAGGCA 203870 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 203869 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 203813 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 203812 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 203753 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 203752 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 203693 Query 1485707 TGTA 1485710 |||| Sbjct 203692 TGTA 203689 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || ||||||||| | |||| ||| || ||| Sbjct 207939 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTCGCCAATTCACCAGGCA 207998 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 207999 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 208055 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 208056 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 208115 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 208116 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 208175 Query 1485707 TGTA 1485710 |||| Sbjct 208176 TGTA 208179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916213423886090