Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq31 113 3e-20 seq67 104 2e-17 seq25 82.4 5e-11 >seq31 Length=344941 Score = 113 bits (124), Expect = 3e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | |||| |||| || || |||||||| || || Sbjct 305531 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 305590 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| ||| | || | || |||||||| | || ||||||||||| | Sbjct 305591 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGAC--A 305648 Query 34906 TGCTATCGATTCA-TTGGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| | | || | ||||| || | || || ||||| ||||| | |||| Sbjct 305649 T--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTCT 305706 Query 34962 TTACAAAGATCTGCAT 34977 | |||||||||||||| Sbjct 305707 TCACAAAGATCTGCAT 305722 Score = 113 bits (124), Expect = 3e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | |||| |||| || || |||||||| || || Sbjct 323796 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 323737 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| ||| | || | || |||||||| | || ||||||||||| | Sbjct 323736 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGAC--A 323679 Query 34906 TGCTATCGATTCATT-GGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| | | || | ||||| || | || || ||||| ||||| | |||| Sbjct 323678 T--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTCT 323621 Query 34962 TTACAAAGATCTGCAT 34977 | |||||||||||||| Sbjct 323620 TCACAAAGATCTGCAT 323605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||||||||| | |||| |||| |||| |||||||| ||||| Sbjct 305303 CTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAA 305362 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || || || ||| | || | || ||||| || | |||||||| || || Sbjct 305363 AATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTCACATT 305422 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || || ||| ||||| | || || || || ||||| | ||||| || Sbjct 305423 GTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCAC 305482 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 305483 AAAGATCTGCATG 305495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||||||||| | |||| |||| |||| |||||||| ||||| Sbjct 324024 CTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAA 323965 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || || || ||| | || | || ||||| || | |||||||| || || Sbjct 323964 AATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTCACATT 323905 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || || ||| ||||| | || || || || ||||| | ||||| || Sbjct 323904 GTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCAC 323845 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 323844 AAAGATCTGCATG 323832 >seq67 Length=206978 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| |||||||| || |||| |||| |||| |||||| || || |||| Sbjct 177980 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 178039 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| |||||||| ||| | || | || |||||||| | || ||||| |||||| Sbjct 178040 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 178099 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || || | || || || | || |||||||| ||||| || || || || | Sbjct 178100 CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGA 178159 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 178160 AGATCTGCAT 178169 >seq25 Length=441456 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||||||||||||| ||||| |||||||| || |||| | || ||| Sbjct 69272 ACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCTTCC 69331 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 | |||||| || || |||||||| || ||||| || Sbjct 69332 AATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 69366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691569491890