Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq31 82.4 6e-11 >seq31 Length=344941 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTAC------CGTCGAAACGGAG 107609 ||||| || ||||| || || ||||| || || || || || ||||||| || Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 107610 G-CTGG--CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 | || | ||||| |||| |||||||||||| || || |||||| | || Sbjct 305662 GACTCGATCGATAATGTC---------AAACAAAAGATTCAAGACAAGGAAGGCATCCCT 305612 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 |||||||| | || || | ||| || || ||||| ||||| | || || Sbjct 305611 CCAGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGC 305552 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||||||| || |||||| |||| ||| | |||| || || Sbjct 305551 GACTACAACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 305496 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTAC------CGTCGAAACGGAG 107609 ||||| || ||||| || || ||||| || || || || || ||||||| || Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 107610 G-CTGG--CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 | || | ||||| |||| |||||||||||| || || |||||| | || Sbjct 323665 GACTCGATCGATAATGTC---------AAACAAAAGATTCAAGACAAGGAAGGCATCCCT 323715 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 |||||||| | || || | ||| || || ||||| ||||| | || || Sbjct 323716 CCAGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGC 323775 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||||||| || |||||| |||| ||| | |||| || || Sbjct 323776 GACTACAACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 323831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875292993590