Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq31 116 3e-21 >seq31 Length=344941 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || | || ||||| ||||| || | || || || || |||||||| || || | | Sbjct 305496 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 305555 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | ||||| ||| || || || || |||||| | || | | ||||||||| || || Sbjct 305556 AACG-TGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 305614 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | |||||||||||| | || | | ||| || |||| || Sbjct 305615 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 305674 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| || || ||||| || || ||||| |||||||| Sbjct 305675 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || | || ||||| ||||| || | || || || || |||||||| || || | | Sbjct 323831 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 323772 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | ||||| ||| || || || || |||||| | || | | ||||||||| || || Sbjct 323771 AACG-TGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 323713 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | |||||||||||| | || | | ||| || |||| || Sbjct 323712 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 323653 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| || || ||||| || || ||||| |||||||| Sbjct 323652 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217744593710