Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 232 5e-55 seq5 102 6e-16 seq8 89.7 4e-12 >seq6 Length=923069 Score = 232 bits (256), Expect = 5e-55 Identities = 942/1458 (65%), Gaps = 41/1458 (3%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || || ||| | |||| ||| || | ||||| |||||||| | ||||| ||||| Sbjct 227265 GTCGACTTTTCAACCGCAGACACGTTCAAGATACCGTTGGCATCAATGTCAAAGGTGACA 227206 Query 281471 TCAATTTGAGGGACCCCTCTCTGAG-CA--GGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 || || || || || || | ||| || |||||||| || ||||| || || | ||| Sbjct 227205 TCGATCTGTGGCACACCAC---GAGGCATCGGTGGGATGCCATCCAAGTTGAACTTGCCC 227149 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 281587 | || || || || | |||||||| || || | || || || || Sbjct 227148 AACAAGTTGTTGTCACGGGTCATCGAACGTTCACCTTCAAAGACCTGAATCAACACACCA 227089 Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTT 281646 | || || || | || || | || | |||| || || || ||| | || ||||| Sbjct 227088 GGCTGGTTGTCGGCGTAGGTCGAGAA-AGTCTGCGACTTCTTGGTAGGCACAGTCGTGTT 227030 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 | | || | | ||||||||| |||||| || ||||| |||||||| || | || || Sbjct 227029 ACGGGCGATCAAAGTGGTCATAACACCACCGGCGGTTTCCAAACCAAGCGACAATGGGGT 226970 Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCA--TCAGTT-TGACCAACAAGAATAGC 281763 ||||||| | | | || ||||| |||||| | || | ||| | ||| || Sbjct 226969 CACATCAAGCAACAACAGATCCTGAAGCTTTTCAGATTGGTCGTTACCGCTCAAAATGGC 226910 Query 281764 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGT 281821 || || | || |||||| | |||||||||||||| || |||| | || || | Sbjct 226909 AGCCTGGACAGTAGCACCGAAGGCAACAGCTTCATCGGGGTTAATCGACTTGCAAG--GC 226852 Query 281822 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 281881 | || || ||||| || | ||||| | ||| ||||| || ||||| | ||||| Sbjct 226851 TCCTTGCCGTTGAAGAATTCCGAAAGCAATTGCTGCACCTTGGGGATACGGGTGGATCCA 226792 Query 281882 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 281941 || || | |||| ||| ||||| || || || || || || | || ||| Sbjct 226791 CCGACAAGCACAACTTCGTGCACTTGGCTCTTCGAAAGCTTCGAGTCACGAAGCACCTTT 226732 Query 281942 TCAACGGGTTCAA--GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 281999 || || ||||| | | | || || ||||| | || | ||||||||| ||| | Sbjct 226731 TCGACAGGTTCCATGGTCTTGCGG--AAGAAGTCGAAGCACATTTCTTCGAAACGAGCAC 226674 Query 282000 TAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT- 282058 || | || || | |||| || ||||| | || |||| ||| || |||| Sbjct 226673 GGGTGATGGTCGAGTTGAAGTCAACACCATCGAAAAGCGAGTCAATTTCGAT-GTAGGCC 226615 Query 282059 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 282118 || | ||| || || || | ||| |||||||||||||| || || | || | || | Sbjct 226614 TGCGCCGACGACGAAAGCGTACGCTTAGCACGTTCACAGGCAGTACGCAGACGGCGGAGC 226555 Query 282119 GCTTTTGCTGATT-GAT-TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACC 282176 || | || || || | | ||| | | || | |||||| || | || | Sbjct 226554 GCACGT--TGGTTCGACGTGATATCCTTGCGGTGCTTGCGCTTGAATTCCGCGACGAAG- 226498 Query 282177 ATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGC 282234 || | || ||||| ||||||||||||||||| ||||| | ||| | || | || || Sbjct 226497 -TGGTCGACGAGACGGTTATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGC 226439 Query 282235 TCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACC 282294 | |||| ||||| || ||||||| ||| || | ||||| || || ||||| Sbjct 226438 CTTCACTTCGAAAATACCTTCTTCAATGCTCAAGAGCGACACATCGAAAGTACCGCCACC 226379 Query 282295 CATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAA 282354 | ||| || ||||| || || ||| | | || || || | ||| || |||| Sbjct 226378 AAGATCGAAGATAAGCACGTTGCGTTC---GCCACCCTTCTTGTCCAAACCGTAGGCAAT 226322 Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||| |||||||||||||| ||||| || | | || || | ||||||||| || || Sbjct 226321 AGCGGCAGCAGTTGGTTCGTTAATGATACGGAGCACGTTCATACCAGCAATGGCACCGGC 226262 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||| || ||||| || | ||| |||||||| ||||| || || || ||||| || |||| Sbjct 226261 ATCCTTGGTGGCCTGACGTTGAGAATCGTTGAAATAGGCCGGGACGGTAATGACTGCATT 226202 Query 282475 TGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGA 282534 | || || || ||||| |||| || || ||||| || | | | ||| || Sbjct 226201 CTTAACCTCCTTACCAATGAAAGCTTCAGCGACTTCCTTCATCTTGATGAGGACCATCGA 226142 Query 282535 TGAAATTTGTTCTGG--AGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATA 282591 || |||| |||||| ||| | ||| |||| |||| | | || | | Sbjct 226141 CGAGATTTCTTCTGGTTGGAACGT--CTTCTCTTCACCCTTGA-AGGTGACAGTGATTTG 226085 Query 282592 TGGTTTATTACCA---ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAAC 282648 |||||| | ||| || | || || |||||||| | || ||||| | || || Sbjct 226084 TGGTTTGTCGCCAGCGCCAGGGGTGACCTTGAATGGCCAGTGCTTGATATCAGCCTGGAC 226025 Query 282649 ACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGG 282708 || ||||| | || | | ||| || || || || |||||||| | || ||| | Sbjct 226024 GATTGGGTCACTGAATTTGCGACCGATCAAACGCTTGGCATCAAAGACCGTGTTGTGCGC 225965 Query 282709 ATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGA 282768 ||| | || |||| | ||||| ||||| || || ||| |||| || || || || | Sbjct 225964 ATTCATGGCGACTTGGTTCTTGGCGGCATCACCGATGAGACGTTCGGTATCGGTGAAAGC 225905 Query 282769 AACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 282828 || || ||||| || || || |||||||| || || || || ||||| || | || Sbjct 225904 GACGTACGATGGGGTCGTACGGTTACCTTGGTCGTTGGCGATGATTTCCACACGGTCGTT 225845 Query 282829 TTGCCATACACCTACACA 282846 |||||| ||||| || || Sbjct 225844 TTGCCACACACCGACGCA 225827 Score = 147 bits (162), Expect = 2e-29 Identities = 588/916 (64%), Gaps = 16/916 (2%) Strand=Plus/Plus Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 282025 ||||| || | ||| | || || ||| || | |||| ||| ||| | |||||| Sbjct 212526 AACAAATCAGCACATAAATCCTCAAATCGTGCACGCGTAATAGTTGAGTTAAAGTCAATT 212585 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 |||||| ||||||| |||| |||||| ||| | || | ||| || | || || || Sbjct 212586 CCTTCGTACAAAGAGTCAATTTCAAT-GTATGCCTGGGCCGATGAGCTCACTGTGCGCTT 212644 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATT-GATTCAAATCT 282142 ||||| ||||| | || | ||| | ||||| | | ||| | | || |||||| Sbjct 212645 GGCACGCTCACAAGAAGTTCGTAGCCGACGTAACGATCGTTGGGCAGTCGA--CAAATCC 212702 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 |||| || || | ||| || || | | | || || ||||| ||||| ||| Sbjct 212703 TTTTTGTACTTGCGCTTAAACTCGCTGGCGAAATACTCGACGAGTCGATTGTCAAAGTCT 212762 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 ||||| ||||| | |||| || | || ||| | || | || | || ||||| | Sbjct 212763 TCACCACCCAAATGGGTATCGCCCGCAGTGGCTTTGACCTCAAATATGCCCTCTTCGATT 212822 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | |||||| | |||||| || ||||| |||| ||||| || | || || ||| Sbjct 212823 GTCAAAAGTGACACATCAAAAGTACCACCTCCCAAGTCAAAGATCAAGACGTTGTGTTCA 212882 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| | || || | |||||||| | || || || || || || || || || Sbjct 212883 CCACCTT---TCTTGTCCAATCCATACGCGATCGCTGCTGCGGTCGGCTCGTTGATCATA 212939 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | ||| ||||| | ||||| || || ||||| ||||||||||||| ||||| || Sbjct 212940 CGCAACACATTCAAGCCAGCGATGACCCCAGCATCCTTAGTGGCTTGTCGCTGTGAGTCA 212999 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 |||||||| || || || || || || || | | || | || || |||||||| Sbjct 213000 TTAAAATACGCCGGCACGGTGATCACAGCGTTCTTAACCTGCTTGCCGATATAAGCCTCG 213059 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTGCT 282560 || | | ||| || ||| | |||||| || |||| ||| | | ||| || | Sbjct 213060 GCGATCTCACGCATCTTGGTTAGCACCATTGACGAGATTTCTTCCGGCGTGAACGTT--T 213117 Query 282561 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTT 282617 | |||| || ||| ||| | | ||| || | || | | | || | Sbjct 213118 TTTCTTCACCTTTATAGCTTACAACGATTAGTGGCTTGTCGCCAGGACCGCCGGTGACCT 213177 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | |||| ||||| | ||||| || || || | |||| |||| | | ||||| | Sbjct 213178 TGAATGACCAATGTCGAATATCCGACTGTACTTCTGGGTCGCTAAATTTGCGGCCAATAA 213237 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 ||| || || ||||| | || ||| | || | || | |||| || || |||| Sbjct 213238 GTCGCTTGGCGTCAAAGACCGTGTTGTGCGCGTTCATGGCGACCTGATTCTTAGCCGCAT 213297 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||||| | |||| || ||||||| || || || ||||| ||||| || || | Sbjct 213298 CACCAATCAATCGCTCTGAGTCGGTAAATGCCACGTAAGAGGGAGTAGTGCGGTTGCCCT 213357 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 ||||||| || || || || || | | |||||||||||| || || | |||| Sbjct 213358 GATCATTGGCGATGATCTCGACGCGGTCGTGTTGCCATACACCAACGCACGAGTAGGTTG 213417 Query 282858 TTCCTAAATCAATACC 282873 | || | ||| ||||| Sbjct 213418 TCCCAAGATCGATACC 213433 >seq5 Length=944367 Score = 102 bits (112), Expect = 6e-16 Identities = 242/366 (66%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| ||||||||||| ||||| | ||||| || ||| || |||| || Sbjct 604970 ACGCTGATCGAAATCTTCACCACCCAAGTGAGTATCACCGTTCGTGGCCAACACTTCAAA 604911 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || | |||| || | || |||||||| || ||||| || | |||||| | Sbjct 604910 CACACCGCCATCAATAGCGAGCAGTGTAACATCGAAAGTACCACCGCCAAGATCAAACAC 604851 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||| || ||| | || | | || || || | ||| || |||| ||||||||||| Sbjct 604850 AAGCACGTTCTTCTCGCTTTGCGCCTTCTTGTCGATACCGTAGGCAATCGCAGCAGCAGT 604791 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || || || | ||| | | ||| ||||| | || ||||| || || || Sbjct 604790 CGGTTCGTTGATGATACGTTGCACAGTCAAACCGGCAATGGTACCAGCATCCTTGGTAGC 604731 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| | || | ||| ||||| || ||||| || || | ||||||||| ||||| Sbjct 604730 TTGACGCTGAGCATCATTAAAGTAAGCAGGCACCGTCACAACGGCATCAAACACTTCACG 604671 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 ||||| || | ||| |||| ||||| || | || | ||| | || | || ||| Sbjct 604670 ACCAATGTAGCCTTCTGCAATTTGCTTCATCTTCGTCAACACCATGGCCGATACTTCTTC 604611 Query 282547 TGGAGA 282552 || || Sbjct 604610 AGGCGA 604605 >seq8 Length=823571 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | ||||||||||| |||||| | || || ||||||| |||||||| ||| | || Sbjct 81422 TTGCGTGGTAAAGAAGGCCGTATTCGTGGCAACCTGATGGGCAAGCGTGTGGATTTTTCA 81363 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || |||||||| |||||| | ||||| || |||| | || ||||||| || || | Sbjct 81362 GCTCGTACAGTCATTACTGCAGATCCAAACATTGAAATTGATCAAGTTGGCGTCCCGCGA 81303 Query 432402 ATTATTGCGAAAAATCTTACTTTT 432425 ||||| | ||||| ||| || Sbjct 81302 TCCATTGCTATGAATCTGACTGTT 81279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740615180310060