Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq31 129 6e-25 seq67 93.3 4e-14 >seq31 Length=344941 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || || | ||| || || || || |||||||| ||||| Sbjct 305495 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 305554 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || || || || || |||||| |||| |||||||||||||| ||||| Sbjct 305555 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 305614 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| ||| |||||||| | | || | || ||| | ||||| || Sbjct 305615 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 305674 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || || ||||| || || || || |||||| Sbjct 305675 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 305723 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || || | ||| || || || || |||||||| ||||| Sbjct 323832 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 323773 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || || || || || |||||| |||| |||||||||||||| ||||| Sbjct 323772 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 323713 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| ||| |||||||| | | || | || ||| | ||||| || Sbjct 323712 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 323653 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || || ||||| || || || || |||||| Sbjct 323652 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 323604 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||| | || || || | ||| ||||| || || || || || |||||| Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || || || |||||| | |||| ||| || ||||| ||||| Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || || | | || | || ||| | ||||| || Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | ||| || ||||| || ||||| Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||| | || || || | ||| ||||| || || || || || |||||| Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || || || |||||| | |||| ||| || ||||| ||||| Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || || | | || | || ||| | ||||| || Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | ||| || ||||| || ||||| Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 >seq67 Length=206978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 137224 TTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATC 137283 ||||| |||||||| || | |||| ||||| | ||| || |||||| ||||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 137284 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCC 137343 |||||||||||||| ||||| || ||||| ||||| || ||||| || | | || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 137344 ACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAAT 137403 | |||| | ||||| || || | || | |||||||| || | ||||| ||||| Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 137404 ATTTGCATAGCTTAT 137418 || ||||| ||||| Sbjct 178162 ATCTGCAT--CTTAT 178174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488542106892000