Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq69 172 5e-38 seq31 120 3e-22 seq67 111 2e-19 >seq69 Length=184949 Score = 172 bits (190), Expect = 5e-38 Identities = 1161/1846 (63%), Gaps = 58/1846 (3%) Strand=Plus/Minus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| ||||||||||| ||||| || || ||| ||||| ||||| ||| | | Sbjct 90251 CGCATGTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTC 90192 Query 148014 ATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGAA 148072 | | |||||||| |||| | || || | ||||||||| || ||| | Sbjct 90191 AACTTGCTCACCGTCGGGT-CGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTA 90133 Query 148073 CGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTCTT 148132 || ||||| ||||| |||| || | | |||| ||| || ||||| | || || Sbjct 90132 GGCACCACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTT 90073 Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC------TGCACCGAGCCGCG 148186 |||| |||||| ||| ||||| ||| |||| ||||||||||| | Sbjct 90072 GTACTTTTCCTTGATTGCATCAGGAAT-----CGA-GCGCACTTTTTGCACCGAGCCACC 90019 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG--AGCTCGATCAGGTCA 148244 || || || || ||||||| || |||| || | || ||||| || || Sbjct 90018 GTCATGCAAGATTTGGTTGCGCACCTCAG--GTGTCCAGATACCAAGTTCGATGAGCTCC 89961 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 | || ||||||| || || | | ||| || || ||||||||||| || |||| | Sbjct 89960 TTCATGAGATACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATG 89901 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||| ||| || || |||| || || || |||||||| ||||| || |||| ||||| Sbjct 89900 TTGGACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTT 89841 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC-TTCAG 148423 |||||| ||| | || ||| |||||||||| ||| | ||| ||| || |||| Sbjct 89840 GGCATGGGCGCCAACAACAGGGAGTTGCGCACACCATG-TTTAGCGACTTGAGCTTTCAA 89782 Query 148424 AGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || ||||| |||||||| | | || || || |||||| || |||| | || Sbjct 89781 TGCAGCCCAATCCCAGAGACCAGATGTTGGAGTGACACCCCACATATCAAACTGGAAGAT 89722 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTT- 148539 ||| ||| | ||| ||||||||| | ||||| || | | || || |||| Sbjct 89721 GCCCTTGCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTC 89662 Query 148540 CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCG 148599 | || | || || | || || ||||| | ||| || ||| ||| |||| | Sbjct 89661 CATAGAT-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTC 89603 Query 148600 CCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 ||| ||| |||||| | || | | || | | |||||| || || | || || | Sbjct 89602 GCGCTTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCA 89543 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAG 148718 | || | || | || || ||| | || || || | ||| || ||||||| Sbjct 89542 CACCAATACCCACAGGGCGATGTCGTAGATTAGA-TCGCTTGGCTTCTGGGATCGGATAG 89484 Query 148719 TGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778 | |||| || |||| ||||| ||||| | ||| | ||| || ||| | ||| Sbjct 89483 TAGTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGC 89424 Query 148779 AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTG 148838 | ||| | || ||| ||| || | || || || || || | ||| Sbjct 89423 TTCTGAAAGTTAAACACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAGTTG 89364 Query 148839 CACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 ||||| || || ||| || ||||||| |||| ||| ||||| || ||| | Sbjct 89363 CACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAG 89304 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 || ||||| ||| | ||||| ||||| ||||| || |||||||| |||||| Sbjct 89303 CGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATG 89244 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCG 149015 || ||| ||| ||||| | ||| | |||| || ||||| || | ||||| Sbjct 89243 TAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACC---ACAATTGTTGCGC- 89188 Query 149016 CGCACTTGCTGCTCGTAGCGACCC---TCCTG---CTCGTATAAAGTATACAGCCGCTCG 149069 |||| || || | ||| || |||| ||||| || |||| |||| Sbjct 89187 ----CTTGATGGTC-TTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCG 89133 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT-GTGCGGGCACATGAGCGACCA 149128 || | || || |||| ||| ||||| | | ||| | ||||| | || ||| Sbjct 89132 AATTCATCACCCCAGCAGTCGAACAGACC-AGTCGCTTCATTAGGGCAGAAAAGACTCCA 89074 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 | |||||| || | ||| |||||||| |||| ||| || | ||| | ||||| | || Sbjct 89073 CTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAG 89014 Query 149189 GT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246 | || || | || || ||| || || | || | || | ||| Sbjct 89013 ATCACGTGCACGATGAAG--TTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAAT 88956 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCC 149303 | ||| || ||||||||||| | || | || | || || ||||||||| || || Sbjct 88955 ACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCT 88896 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 || || |||| || | ||| || ||||| || | |||||| |||| || ||| Sbjct 88895 TGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGAC 88836 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 ||||| || ||| || ||| || ||| || | ||||||| | ||| |||| Sbjct 88835 GTGCCATTTGTACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCG 88776 Query 149424 ATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCG 149483 || || || | |||| |||||| ||||| | ||| || ||| |||||||| Sbjct 88775 ATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCA 88716 Query 149484 ATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCG 149543 || ||| | ||||| || | || ||||| ||| ||| || | || || Sbjct 88715 ATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCT 88656 Query 149544 GCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGAC 149603 || |||| || || ||||||| || || | | ||| ||| |||| | Sbjct 88655 GCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATACGTC 88596 Query 149604 TCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGC 149663 || ||||| | | || || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 88595 TCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCATTTGC 88536 Query 149664 TGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT--TTCTAGTGTCT 149721 |||||||| || |||||| || | || || || || | || || |||| Sbjct 88535 TGCGGTCGTTCGCACACTTTCCCACCCACACGGAATAAATA--CGATCGCTCAAGCGTCT 88478 Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || |||||||||| | ||| |||||||| ||| ||||| ||||| Sbjct 88477 TGAAGCCAAAGTAATCGTATTCAAAGTCACGGTCGTGGATGATGGC 88432 >seq31 Length=344941 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| | ||||| |||||||| || Sbjct 305526 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA-TCCTCAAGCTGCTTTCC 305584 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || |||||||||||||||||||| |||||||| || Sbjct 305585 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 305644 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||||| || || ||||| | |||| || || || || | || Sbjct 305645 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGT 305704 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 305705 CTTCACAAAGATCTGCAT 305722 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| | ||||| |||||||| || Sbjct 323801 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA-TCCTCAAGCTGCTTTCC 323743 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || |||||||||||||||||||| |||||||| || Sbjct 323742 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 323683 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||||| || || ||||| | |||| || || || || | || Sbjct 323682 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGT 323623 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 323622 CTTCACAAAGATCTGCAT 323605 Score = 118 bits (130), Expect = 1e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || ||||| ||||| || |||| || || |||| ||| || |||||||| | Sbjct 305754 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGT--ACGACCGTCTTCCAGCTGCTTTC 305811 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | ||||| || || ||||| || |||||||| || ||||| |||| Sbjct 305812 CAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCT 305871 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || ||||| || || ||||| | |||| ||| |||||||| || | Sbjct 305872 TCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTG 305931 Query 133642 TTTTTACGAAAATCTGCATGGCTTATTTATTCCTTCCTCTT 133682 | || |||||||||||||| | | ||||| |||| |||| Sbjct 305932 TCTTCACGAAAATCTGCATTGTCTTCTTATTGCTTCTTCTT 305972 Score = 118 bits (130), Expect = 1e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || ||||| ||||| || |||| || || |||| ||| || |||||||| | Sbjct 323573 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGT--ACGACCGTCTTCCAGCTGCTTTC 323516 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | ||||| || || ||||| || |||||||| || ||||| |||| Sbjct 323515 CAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCT 323456 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || ||||| || || ||||| | |||| ||| |||||||| || | Sbjct 323455 TCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTG 323396 Query 133642 TTTTTACGAAAATCTGCATGGCTTATTTATTCCTTCCTCTT 133682 | || |||||||||||||| | | ||||| |||| |||| Sbjct 323395 TCTTCACGAAAATCTGCATTGTCTTCTTATTGCTTCTTCTT 323355 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || || || ||||||||||| | || || |||| ||| || |||||||| | Sbjct 305070 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGT--ACGACCGTCTTCCAGCTGCTTAC 305127 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| ||||||| || || || || ||||| || ||||||||||| |||||| |||| Sbjct 305128 CCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCT 305187 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| | ||| | || ||||| || | |||| ||| ||||| |||| | Sbjct 305188 TCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACG 305247 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 305248 TCTTCACGAAGATCTGCAT 305266 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || || || ||||||||||| | || || |||| ||| || |||||||| | Sbjct 324257 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGT--ACGACCGTCTTCCAGCTGCTTAC 324200 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| ||||||| || || || || ||||| || ||||||||||| |||||| |||| Sbjct 324199 CCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCT 324140 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| | ||| | || ||||| || | |||| ||| ||||| |||| | Sbjct 324139 TCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACG 324080 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 324079 TCTTCACGAAGATCTGCAT 324061 >seq67 Length=206978 Score = 111 bits (122), Expect = 2e-19 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || || ||||| || ||||| || ||||||||||| |||| Sbjct 178024 TGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATC 178083 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||||| | |||| |||| | || |||||||| | |||| ||| ||||| Sbjct 178084 TTTTGCTTGACGTTGTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCC 178143 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTAT 133667 || |||||||| ||||| |||||||| ||||| Sbjct 178144 GTAAGAGTTTTGACGAAGATCTGCAT--CTTAT 178174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418926744400