Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq69 125 2e-23 seq8 86.0 1e-11 >seq69 Length=184949 Score = 125 bits (138), Expect = 2e-23 Identities = 177/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 |||| || ||||| | || ||||| |||||||| || || ||||||||||| | Sbjct 88847 TTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGTGGTGGCA 88906 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| |||||| | || || |||||| | || ||||||| ||| Sbjct 88907 AGCGCAAAGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCC 88966 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || | | || ||||| || |||| || | ||||||||| | ||||| || | Sbjct 88967 TGGATTTGAGGAAGAATCACGGTAATGAACTTCATCGTGCACGTGATCTGTTTTACGCCA 89026 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 ||||||| ||||||| |||||||| ||||| ||| || ||| |||| |||| | | Sbjct 89027 TGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACGGCGAGTGGAGTCTTTTCT 89086 Query 110923 GTCCTCAT 110930 | ||| || Sbjct 89087 GCCCTAAT 89094 >seq8 Length=823571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/168 (73%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| |||| ||| | || |||||||| || |||||||| || ||||| ||| Sbjct 81089 GATTTGGTATTGTTTAATCGTCAGCCATCACTCCACAAAATGTCAATTATGGCACATCGT 81030 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT---TA 305439 || ||||| || |||| | |||||| || || ||| | || | |||| || || Sbjct 81029 GTAAAAGTTTTTGACTGG-TCGACATTCCGTTTGAATTT--GTCGGT-TACGTCTCCGTA 80974 Query 305440 TAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| ||||||||||| || ||||||||| | || || || ||||| Sbjct 80973 CAATGCCGATTTTGATGGTGACGAAATGAATCTTCACGTGCCACAATC 80926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808086127910