Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq31 122 6e-23 seq25 109 4e-19 seq67 104 2e-17 >seq31 Length=344941 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||| ||||| ||||| || ||| Sbjct 305267 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 305326 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || ||||| || |||||||||||||| |||||| | || Sbjct 305327 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 305386 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| || ||| |||| ||| | | ||| | |||| Sbjct 305387 AATACCTTCCTTATCTTGGATTTTTTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCA 305445 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || |||||||| || || ||||| || |||||||||||||| Sbjct 305446 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||| ||||| ||||| || ||| Sbjct 324060 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 324001 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || ||||| || |||||||||||||| |||||| | || Sbjct 324000 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 323941 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| || ||| |||| ||| | | ||| | |||| Sbjct 323940 AATACCTTCCTTATCTTGGATTTTTTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCA 323882 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || |||||||| || || ||||| || |||||||||||||| Sbjct 323881 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| || ||||| || | || ||| || || |||||||| ||| Sbjct 305496 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 305555 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| ||||| || | ||| ||||||||| | || Sbjct 305556 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 305615 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||||| | ||| || | | |||| | ||| || Sbjct 305616 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGA-CATTATCGATCGAGTCGGACGGTTCGAC 305674 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| | ||||| || || || ||||| || || ||||||||||||||| Sbjct 305675 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 305723 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| || ||||| || | || ||| || || |||||||| ||| Sbjct 323831 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 323772 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| ||||| || | ||| ||||||||| | || Sbjct 323771 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 323712 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||||| | ||| || | | |||| | ||| || Sbjct 323711 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGA-CATTATCGATCGAGTCGGACGGTTCGAC 323653 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| | ||||| || || || ||||| || || ||||||||||||||| Sbjct 323652 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 323604 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||||| || | || || || || || || || ||| Sbjct 305723 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 305782 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| |||| || ||||| ||||||||||||||||| ||||| | || Sbjct 305783 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 305842 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| ||||| ||| || | ||| | | |||| | ||| | Sbjct 305843 AATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGA 305901 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| | |||||| || || || || | || || || || |||||||| || Sbjct 305902 CGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGT 305953 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||||| || | || || || || || || || ||| Sbjct 323604 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 323545 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| |||| || ||||| ||||||||||||||||| ||||| | || Sbjct 323544 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 323485 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| ||||| ||| || | ||| | | |||| | ||| | Sbjct 323484 AATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGA 323426 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| | |||||| || || || || | || || || || |||||||| || Sbjct 323425 CGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGT 323374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || | || || ||||| || |||||||| Sbjct 305040 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 305099 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| |||| || || || |||||||| | ||| || |||||| | || Sbjct 305100 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 305159 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||||| |||| | | |||| | ||| | |||||| Sbjct 305160 ATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCAC 305218 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || ||||| || || |||||||||||| Sbjct 305219 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 305267 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || | || || ||||| || |||||||| Sbjct 324287 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 324228 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| |||| || || || |||||||| | ||| || |||||| | || Sbjct 324227 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 324168 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||||| |||| | | |||| | ||| | |||||| Sbjct 324167 ATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCAC 324109 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || ||||| || || |||||||||||| Sbjct 324108 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 324060 >seq25 Length=441456 Score = 109 bits (120), Expect = 4e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| |||||||| || || |||||||| || || |||||||| || | Sbjct 69252 CACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG 69311 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || ||||| |||| |||||||| || || ||||| |||| |||||||||||| Sbjct 69312 ACAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 69366 >seq67 Length=206978 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| |||||||| || || || ||||| | || |||||||| || || ||||| ||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||| ||||||||| | || | ||||| ||||| || || || || | | | ||| Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTC 178100 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | |||| | ||||||||| | |||||| || || || || | ||||| || || Sbjct 178101 AATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAA 178160 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 178161 GATCTGCAT 178169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702758115200