Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq31 98.7 2e-15 seq67 87.8 4e-12 >seq31 Length=344941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || |||||||| |||||||| ||||| || ||| Sbjct 305491 CAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCGGAC 305432 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || |||||||| || ||||| || ||||| ||| || || |||| Sbjct 305431 TCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGA---TCAA 305375 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || ||||| |||||||||||||||||||| | || ||| ||| || ||| Sbjct 305374 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 305315 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 |||| || ||||| || || ||| Sbjct 305314 ATCCAAAAGGAGTCGACGCTCCAC 305291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || |||||||| |||||||| ||||| || ||| Sbjct 323836 CAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCGGAC 323895 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || |||||||| || ||||| || ||||| ||| || || |||| Sbjct 323896 TCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGA---TCAA 323952 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || ||||| |||||||||||||||||||| | || ||| ||| || ||| Sbjct 323953 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 324012 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 |||| || ||||| || || ||| Sbjct 324013 ATCCAAAAGGAGTCGACGCTCCAC 324036 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| || ||| || ||| Sbjct 305719 CAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCCGAC 305660 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || || |||||||||||||| || ||||| || || || ||| Sbjct 305659 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 305600 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||||||| | || ||||| | || ||| ||| |||||| | Sbjct 305599 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 305540 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || | ||| | || ||| | || || Sbjct 305539 CAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCG 305502 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| || ||| || ||| Sbjct 323608 CAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCCGAC 323667 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || || |||||||||||||| || ||||| || || || ||| Sbjct 323668 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 323727 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||||||| | || ||||| | || ||| ||| |||||| | Sbjct 323728 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 323787 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || | ||| | || ||| | || || Sbjct 323788 CAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCG 323825 >seq67 Length=206978 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || || ||||| |||| |||||| ||| ||| Sbjct 178166 CAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCTTCGGAC 178107 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||| || || || ||||||||| || || ||| Sbjct 178106 AGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAGCAA 178047 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| ||||||||||| | || | | || |||||| || Sbjct 178046 CGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTACAACATC 177987 Query 206353 CAGAAAGAGT 206362 || |||| || Sbjct 177986 CA-AAAGGGT 177978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816105955510