Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 251 1e-60 seq47 96.9 5e-14 seq69 89.7 7e-12 >seq1 Length=1523961 Score = 251 bits (278), Expect = 1e-60 Identities = 415/586 (71%), Gaps = 12/586 (2%) Strand=Plus/Plus Query 1455730 CGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA--TATGGGAAATG 1455787 ||| ||||| || || ||||| ||||||| |||| | | |||| | |||| ||| Sbjct 464751 CGAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGC--CGGAAGTGTGGGCCATG 464808 Query 1455788 TACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCC-GACA 1455846 ||| || |||||||| || ||||||||||| || || | || | || || ||| Sbjct 464809 TAC-AAGAAGGCCGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTT-GGTGCATGACC 464866 Query 1455847 CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 | ||||||| | ||| |||| |||| ||| ||||||||||||||| | || | Sbjct 464867 TGAAGGACTGGGTCAAGATGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCGT 464926 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| || ||||||||||| || ||| ||| ||||| || || | | || Sbjct 464927 TCTTT-GCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCAGTAGTGAA 464985 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| |||| ||||| || | |||||||| |||||||| ||||| |||||||| ||| Sbjct 464986 GTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCATTGAAAACATTCAC 465045 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || ||| |||||||| |||| ||||| ||| |||| |||||| ||||||||||||| Sbjct 465046 TCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCAC 465105 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | | || || ||||| || | || | |||| || |||||| ||||| ||||| Sbjct 465106 TTGCTACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAG 465165 Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCG 1456205 ||| | || | | || | | || ||| || ||| | | | ||||| || |||| Sbjct 465166 TGGTGCGAC-TCGCGCGCTGCTGC-CTATGCTGAACGGATTTTGGCATTTGCGGCTGTCG 465223 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||| ||||| || ||||| |||||| ||||||| ||| | |||||||| || |||| Sbjct 465224 AGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCA 465283 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 |||| |||| || | || || ||| | |||||||| || |||| Sbjct 465284 TGCCTGGTC-TCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAG 465328 Score = 140 bits (154), Expect = 5e-27 Identities = 235/330 (71%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GA 1456505 ||| ||||||||||||||||| || || | ||| | | |||||||||||||| | || Sbjct 465327 AGGGTTGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCAACAAGCTTCCGGA 465386 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 ||| | || | | ||||| | || |||||| ||| ||||| || || |||| | Sbjct 465387 GTCACGCGTGCACG-AAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGG 465445 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| | || ||||||||| | | |||| ||||| |||||||||||| Sbjct 465446 ATTCGCTCCCTGTGGAATTGATTGGCATGAACTCGA-CGCTGATGTGTCAGTACATTGAA 465504 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 || ||| || || || |||| ||||| || || ||| |||| ||| | Sbjct 465505 TTCTGT-GCTGATCGTTTGCTACATGCGCTTGG-TGTATCCAAGATCTAC--AACGCCAA 465560 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 ||||| || |||||||| ||||||| || ||||||||||||| || || ||| Sbjct 465561 GAACCCTTTTGACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAA 465620 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || || || ||| ||||||| ||||| Sbjct 465621 GCGTGTGGGTGAATACTCCAAGGCTGGCGT 465650 >seq47 Length=273717 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/255 (69%), Gaps = 21/255 (8%) Strand=Plus/Minus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 125092 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 125042 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 125041 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 124988 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 124987 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 124931 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| ||| || ||| |||| | |||||| Sbjct 124930 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTGCCTGGTGAATTGGCGAAGCACGC 124871 Query 725126 CGTCTCCGAGGGCAC 725140 ||| || || ||||| Sbjct 124870 CGTGTCGGAAGGCAC 124856 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/255 (69%), Gaps = 21/255 (8%) Strand=Plus/Plus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 203673 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 203723 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 203724 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 203777 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 203778 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 203834 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| ||| || ||| |||| | |||||| Sbjct 203835 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTGCCTGGTGAATTGGCGAAGCACGC 203894 Query 725126 CGTCTCCGAGGGCAC 725140 ||| || || ||||| Sbjct 203895 CGTGTCGGAAGGCAC 203909 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/255 (69%), Gaps = 21/255 (8%) Strand=Plus/Minus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 208195 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 208145 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 208144 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 208091 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 208090 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 208034 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| ||| || ||| |||| | |||||| Sbjct 208033 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTGCCTGGTGAATTGGCGAAGCACGC 207974 Query 725126 CGTCTCCGAGGGCAC 725140 ||| || || ||||| Sbjct 207973 CGTGTCGGAAGGCAC 207959 >seq69 Length=184949 Score = 89.7 bits (98), Expect = 7e-12 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 ||| |||| || || || | |||| || || ||||||||||| ||| || || || Sbjct 90109 GATTTGGCAGCTGATCGTGGTGCCTACATCTGTCAAAGCCAGTCGCTGAACGTGCACATC 90168 Query 263287 GCCGACCCGACGGCCGAGAGCA---TCACGTCGATGCACGCCTATGCGTGGCGTCGCGGC 263343 ||||||||||||| ||||| | || ||||||||| || |||||| || || Sbjct 90169 GCCGACCCGACGGT---GAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGA 90225 Query 263344 CTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACC 263403 || ||||| ||||||||||| |||| || || ||| | |||||||| || || Sbjct 90226 CTTAAGACCGGCATGTACTACATGCGTGGGCGACCGAAGGCCGATGCCATTCAGTTTACG 90285 Query 263404 GTCGATCAGGC 263414 ||||| |||| Sbjct 90286 GTCGACAAGGC 90296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781299930220