Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq31 140 3e-28 seq67 118 1e-21 seq119 105 7e-18 >seq31 Length=344941 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || ||||| || | ||| | || || ||||| |||||||||||||||| |||| ||| | Sbjct 305505 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC-GTGCG 305563 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || | ||| |||||||| || || |||||||| Sbjct 305564 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 305623 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||||||||||| || | | |||||||| ||| ||||| | || Sbjct 305624 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 305683 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || || || ||||| Sbjct 305684 GATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || ||||| || | ||| | || || ||||| |||||||||||||||| ||||| || | Sbjct 323822 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCG 323764 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || | ||| |||||||| || || |||||||| Sbjct 323763 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 323704 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||||||||||| || | | |||||||| ||| ||||| | || Sbjct 323703 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 323644 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || || || ||||| Sbjct 323643 GATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| | ||| | || |||||||| ||||| || ||||||| Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| || || ||||||||||||||||| ||||| || || Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || ||| | | |||||||| ||| ||| Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 || | || ||||| || ||||| | || || |||||||| |||||| | || || || Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGTCTTCTTATT 305962 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| | ||| | || |||||||| ||||| || ||||||| Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| || || ||||||||||||||||| ||||| || || Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || ||| | | |||||||| ||| ||| Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 || | || ||||| || ||||| | || || |||||||| |||||| | || || || Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATTGTCTTCTTATT 323365 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| ||||| || |||||||| ||||| ||||||| ||||| || | Sbjct 305277 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACG-TGCG 305335 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || | ||| || || || |||||||||||||| ||||| || || || ||||| Sbjct 305336 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTC 305395 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| |||||||| || || ||| | | ||| || | ||||| || | ||| Sbjct 305396 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 305455 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| ||||| || || || || || || || || ||||| Sbjct 305456 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| ||||| || |||||||| ||||| ||||||| ||||| || | Sbjct 324050 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACG-TGCG 323992 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || | ||| || || || |||||||||||||| ||||| || || || ||||| Sbjct 323991 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTC 323932 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| |||||||| || || ||| | | ||| || | ||||| || | ||| Sbjct 323931 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 323872 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| ||||| || || || || || || || || ||||| Sbjct 323871 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || |||||||||||||| ||||| || | | || || Sbjct 305049 AGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGA 305108 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | ||| || ||||| || || || ||||| Sbjct 305109 CCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCC 305168 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| || | |||||| || | ||| Sbjct 305169 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTG 305228 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 305229 ATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || |||||||||||||| ||||| || | | || || Sbjct 324278 AGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGA 324219 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | ||| || ||||| || || || ||||| Sbjct 324218 CCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCC 324159 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| || | |||||| || | ||| Sbjct 324158 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTG 324099 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 324098 ATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 >seq67 Length=206978 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| ||||||||||| || ||| | || || | || ||||| ||||| | Sbjct 177980 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 178039 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||| |||||||| || || || ||||| || || || || ||||| ||||| || Sbjct 178040 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 178099 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||| || | ||||||||| || || ||||| || || || | |||||| ||| Sbjct 178100 -CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACG 178158 Query 134703 AAAATTTGCATTTT 134716 || || ||||| || Sbjct 178159 AAGATCTGCATCTT 178172 >seq119 Length=50977 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| ||||||||||||||||| || || || ||||| || Sbjct 37824 TCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTG 37765 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || |||||||| || ||||| ||| | | ||| || | || |||||||| || ||| Sbjct 37764 TCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTGATG 37705 Query 134679 GTTTTACC 134686 |||||||| Sbjct 37704 GTTTTACC 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396441581200