Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 187 3e-42 seq69 136 5e-27 >seq1 Length=1523961 Score = 187 bits (206), Expect = 3e-42 Identities = 411/609 (67%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| ||||| || |||||||| || | || ||||| | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCA 39727 | |||| |||||||| || |||||||| || | ||| || |||| |||| ||| | || Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCC 465240 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 ||||||||||| || || || || |||||||| | || | || | || | | | Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 39787 ----ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | | | | ||||||| ||||||| || ||||| | || || || || |||| Sbjct 465179 CGCGAGTC-GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 465122 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | |||||| | | | | || || ||||| | ||||| || || || | Sbjct 465121 CGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 465062 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | |||| ||| || || ||||||||||| || ||||| ||||||||||| || | | Sbjct 465061 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCG 465002 Query 39963 CTTCAGTAATTTGTACCTCTGAAC--AAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 | |||| | ||| || || || ||| || | ||| | ||||| ||||| || || Sbjct 465001 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 464944 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 ||| || || ||||| || ||||| || || || || || | ||| | | |||| Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 || |||||| || | || | | ||| | ||||||||| |||||||| ||| Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || ||||| ||||||||| ||| | || | | ||| ||||| || | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 40201 ATTTGGATT 40209 |||||| || Sbjct 464763 ATTTGGGTT 464755 >seq69 Length=184949 Score = 136 bits (150), Expect = 5e-27 Identities = 322/483 (67%), Gaps = 5/483 (1%) Strand=Plus/Minus Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 |||||| |||| | ||| | |||| |||| || || || |||| || | ||||| Sbjct 89934 AAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAATGGATTC 89875 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATT 68840 |||||| |||| || |||||||| || || |||||||| || |||| ||| | || Sbjct 89874 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 89815 Query 68841 TCTAAGACCATGTGTTATGATTTTATCTTTTAGATG-TTTCCAATCCCAAAGATCAGATG 68899 | | ||||||| | || || | |||| | ||| ||||||||| ||| |||||| Sbjct 89814 GCGCACACCATGTTTAGCGACTTGAGCTTTCA-ATGCAGCCCAATCCCAGAGACCAGATG 89756 Query 68900 GTACA---ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT 68956 | | ||| ||| | ||| | || | || || || || || || || | | Sbjct 89755 TTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTCGT 89696 Query 68957 ATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAAT 69016 | |||||||| || || | || | || ||||| | ||| || | || || || | Sbjct 89695 AAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATAGT 89636 Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076 | | ||||| ||||| | ||| || | ||| | |||| ||| ||||| || | Sbjct 89635 ACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACC 89576 Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | |||||||| ||||| ||||| || || || |||||||| | ||| | ||||| Sbjct 89575 CCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTA 89516 Query 69137 TATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGAT 69196 ||| || | | |||||||| || ||||| || || ||||| || | || || |||| Sbjct 89515 GATTAGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGAT 89456 Query 69197 TTC 69199 ||| Sbjct 89455 TTC 89453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906138228400