Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq2 100 6e-16 >seq2 Length=1125230 Score = 100 bits (110), Expect = 6e-16 Identities = 194/284 (68%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 49255 TTCGTTTTGATATGTCAGAGTTTTCGCAAGACCACACTGTATCTAAACTTATTGGTTCAC 49314 |||| |||||||||| |||| | | |||| ||| | || | || |||||| ||| Sbjct 289993 TTCGCATTGATATGTCTGAGTATATGGAAGAACACTCGGTTGCACGGCTGATTGGTGCAC 289934 Query 49315 CTCCTGGATATGTAGGACATGAAACAGGAAATGGTCAGCTTCTTGATAAAGTTGAAC--A 49372 | || || || | ||||| ||| ||| ||||||| | ||| ||| || | Sbjct 289933 CACCCGGCTACATTGGACACGAAGAAGG---TGGTCAGTTGACTGAGGCTGTTCGACGGA 289877 Query 49373 ATTCCCTAATGCAGTACTTCTACTGGATGAAATTGAAAAAGCACATCCAAAAGTACTGCT 49432 || ||| || || |||| ||||||||||||||||||| |||||||| || ||| Sbjct 289876 AT--CCTTATAACGTGATTCTGATGGATGAAATTGAAAAAGCTCATCCAAAGGTGCTGAA 289819 Query 49433 GACATTCCTACAAGTATTGGATGAAGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTA 49492 | || || ||| | ||||| || || ||| | || | ||| || |||| |||||| | Sbjct 289818 CATTTTGCTCCAACTTTTGGACGATGGACGTCTTACGGATTCGCATGGAAGAACAGTCGA 289759 Query 49493 CTTTAATAATATTACTGTTATTATGACTACAAACCTTGGAGCAG 49536 |||| ||| | ||| || ||||| | ||| |||| |||| Sbjct 289758 CTTTTCAAATGTAGTTGTCATCATGACGTCTAACATTGGGGCAG 289715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108990795209690