Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq69 136 3e-27 seq31 129 5e-25 >seq69 Length=184949 Score = 136 bits (150), Expect = 3e-27 Identities = 789/1250 (63%), Gaps = 61/1250 (5%) Strand=Plus/Minus Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 ||| |||||||| || ||||| | | ||| |||||| |||||| || |||| |||||| Sbjct 89934 AAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAATGGATTC 89875 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884 || ||||| || || || || || | || || |||||| |||| || || || || Sbjct 89874 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 89815 Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGA---GAGGT 130941 || | ||| || | | || || |||||| || |||||||||| ||| || || Sbjct 89814 GCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAGATGT 89755 Query 130942 AGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTC 131001 || ||||| |||||||||||| || | ||||| || || | || | || Sbjct 89754 TGGAGTGACACC---CCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTC 89698 Query 131002 GAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTA 131061 | | | ||| || || | | || || || | ||||||| ||||| || Sbjct 89697 GTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATA 89638 Query 131062 ATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAA 131121 || | ||||| ||| || || || |||| | |||||| | || ||| | || || Sbjct 89637 GTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAA 89578 Query 131122 TTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTT 131181 ||| | |||||| || || || | || || | |||| ||||| || | |||| Sbjct 89577 CCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCG 89518 Query 131182 TAAATTACATTTACGCGAACATTCGGTG---GGATAAAGGTTAATGTCAATTATTTTGTT 131238 || |||| || ||| ||| | | ||||| ||| || ||||| | ||||| Sbjct 89517 TAGATTAGAT---CGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTT 89461 Query 131239 TAAATTGCGCACTACAATTTGTGTGACGCTTTTC----AATTTGTCGAAATCAAACGTGC 131294 | ||| | ||||| | |||| |||| | || | || | |||| | Sbjct 89460 CAGATTTCTGGTCACAATCTTCGTGA----TTTCGTAGAGCTTCTGAAAGTTAAACACAC 89405 Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACA---CATATTGACGCCAGATTACAAACTGCCG 131351 || | |||| |||||| | ||| || || ||||||| || || || || Sbjct 89404 CATTGTCGA------CAAATT--TGGACAGTGCA-ATGGACGCCAAGTTGCACACCGCGA 89354 Query 131352 TTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGC 131411 |||||| | |||| || | || |||||| |||||| || |||| Sbjct 89353 CTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGC 89294 Query 131412 CCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTG 131470 |||| ||||| ||||| || ||| |||| |||||||| | |||||| || ||| Sbjct 89293 CCAAGTTTTGCTGATTCGACTTGCGATTG-CATGCATCCTTGTAGAGCATGTAAGGTGTG 89235 Query 131471 CCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGAT 131528 || ||||||| |||| || | |||| |||| | | || | | || ||||| Sbjct 89234 CCGGTTTCGATCTGAGCGTCCAAAATGG--CGAACCACAATTGTTGCGCC-----TTGAT 89182 Query 131529 ATTTGTATTGGCC--GCGTTT---TTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC 131583 | | |||| || | |||||| || |||||| | || || | | || Sbjct 89181 GGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACC 89122 Query 131584 AAA-----CGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCG 131638 | ||||| | ||| | | ||| | || || | || |||| ||||| Sbjct 89121 CCAGCAGTCGAACAGACCAG--TCGC---TTCATTAGGGCAGAAAAGACTCCACTCGCCG 89067 Query 131639 TTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTA 131698 || ||| || |||||||| |||||||| || | ||| | ||||| |||||||| | Sbjct 89066 TTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGT 89007 Query 131699 GCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCA 131758 || | ||| |||| | | || |||||| | || || || | ||| ||| Sbjct 89006 GCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCA 88947 Query 131759 TGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACA 131815 ||||| || |||||||| | ||| | | ||||||||||| ||| ||||||| ||| Sbjct 88946 TGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAACG 88887 Query 131816 TGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTG 131875 | |||| | ||| ||| | || |||||||| ||| | | |||||||| | ||||| Sbjct 88886 TAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTT 88827 Query 131876 GTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCG 131935 || | |||||||| | || | || ||||| | | ||| || ||||| || Sbjct 88826 GTACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCT 88767 Query 131936 CCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 | | || ||||| |||||||| | ||||||| || || || || Sbjct 88766 GCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTC 88717 >seq31 Length=344941 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | ||||| || || || || || |||||||||||||| || Sbjct 305037 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 305096 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || ||||||| ||||| ||||| || |||||||||| |||||||| || Sbjct 305097 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 305156 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || |||||| | |||| | | || | || ||| | | ||| Sbjct 305157 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 305216 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| || | ||||| |||| || ||||| ||||| |||||| Sbjct 305217 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 305267 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | ||||| || || || || || |||||||||||||| || Sbjct 324290 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 324231 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || ||||||| ||||| ||||| || |||||||||| |||||||| || Sbjct 324230 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 324171 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || |||||| | |||| | | || | || ||| | | ||| Sbjct 324170 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 324111 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| || | ||||| |||| || ||||| ||||| |||||| Sbjct 324110 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 324060 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||| || || ||||| || || ||||||||| Sbjct 305268 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 305327 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| || || ||| |||| | |||||||||||| || || Sbjct 305328 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 305387 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || | |||| | || | || ||| | || || || Sbjct 305388 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 305447 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| ||||||| || ||||||||||| ||||| Sbjct 305448 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||| || || ||||| || || ||||||||| Sbjct 324059 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 324000 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| || || ||| |||| | |||||||||||| || || Sbjct 323999 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 323940 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || | |||| | || | || ||| | || || || Sbjct 323939 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 323880 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| ||||||| || ||||||||||| ||||| Sbjct 323879 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| ||||||||||| || || || || || || ||||| |||||||||| Sbjct 305494 TGCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGC 305553 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| | || || ||||| || || || | |||||||| || ||||| || | Sbjct 305554 TCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAG 305613 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | ||| | | || | | ||| | | ||| | Sbjct 305614 GGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGA 305673 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | || |||| || ||||| | || ||||||||||| |||||| Sbjct 305674 CGTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 305723 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| ||||||||||| || || || || || || ||||| |||||||||| Sbjct 323833 TGCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGC 323774 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| | || || ||||| || || || | |||||||| || ||||| || | Sbjct 323773 TCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAG 323714 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | ||| | | || | | ||| | | ||| | Sbjct 323713 GGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGA 323654 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | || |||| || ||||| | || ||||||||||| |||||| Sbjct 323653 CGTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 323604 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || || || || || || |||||||| ||||||||| Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || || || |||| | |||||||||||| || || Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| | |||| | | || | | ||| | | ||| || Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || || ||||| || || ||||| Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || || || || || || |||||||| ||||||||| Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || || || |||| | |||||||||||| || || Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| | |||| | | || | | ||| | | ||| || Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || || ||||| || || ||||| Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932794544720