Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq69 217 2e-51 seq1 127 3e-24 >seq69 Length=184949 Score = 217 bits (240), Expect = 2e-51 Identities = 957/1485 (64%), Gaps = 60/1485 (4%) Strand=Plus/Minus Query 110629 CCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACC 110688 ||||| ||||| | |||| || || | ||| | ||||||||| || ||| ||||| Sbjct 89985 CCAGATACCAAGTTCGATGAGCTCCTTCATGAGATACTTGTTGACGATCGTAAATTCACC 89926 Query 110689 TGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACC 110748 ||||| | | ||| ||||| | ||| |||| |||| | |||||||||| || Sbjct 89925 AGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAATGGATTCATTATTGCC 89866 Query 110749 CAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 |||||| || || || || || |||||||| || |||| ||| || ||| || | ||| Sbjct 89865 CAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTTGCGCACACC 89806 Query 110809 CTTCTC-----CTTGATGCGTTCCTTG-AGAACA-TCCCAGTCGTAGTTGAGCTTGGTTT 110861 | | ||||| || ||| || || || |||||| | || |||| | Sbjct 89805 ATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCAATCCCAGAG--ACCAGATGTTGGAGT 89749 Query 110862 CACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTT 110920 || ||||||| |||||||| ||| |||||| | | || || ||||| | ||| Sbjct 89748 GACAC-CCCACATATCAAACTGGAAGATGCCCTTGCT-CACAGGGGAGCCCTCGTAAGTT 89691 Query 110921 TCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACAT 110979 ||||| | || | | | || | ||| | || | || |||| || | | | |||| Sbjct 89690 TCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT-GCTTCCATGGCTCCATAGTACAG 89632 Query 110980 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA 111039 |||||||| || | |||| || |||| || || || | | | | Sbjct 89631 CGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCAT 89572 Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 | |||||| |||| || | ||||| ||||| | ||| | ||| | ||||| | ||| Sbjct 89571 GAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATT 89512 Query 111100 AGACTTTCGCGCAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATT 111156 ||| |||| | || | ||||| | || | |||||||| ||| ||||| Sbjct 89511 AGA---TCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATT 89455 Query 111157 TTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC 111216 | |||| |||||||| |||||||| | || || | | | | ||| | | | || Sbjct 89454 TCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTC--- 89398 Query 111217 ATTGACATACTTTGGA-AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275 |||| | |||||| || || || || ||||| ||||| || || || ||||| Sbjct 89397 ---GACAAA-TTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGG 89342 Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTT---GGAACTCTTAATCGTCCCCAAATTCT 111332 ||||||||| | | || || ||||| ||| | ||| || ||||| || Sbjct 89341 ATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCG---AATAGTGCCCAAGTT-- 89287 Query 111333 TTTGGTTACTCTTCTTG---TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| | | || |||| ||||| |||||||||||||||||||| || || || || | Sbjct 89286 -TTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTT 89228 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAACATCG--GCGGCTGGTACAATGGCGTTG-- 111445 | |||| | | | ||| || ||| | || | ||| || | |||| ||| Sbjct 89227 CGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGCGCCTTG----ATGGTCTTGCG 89173 Query 111446 -GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 111503 ||| |||| || |||||||| ||||| | ||| || || || |||||| | || || Sbjct 89172 GGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCC-CAGCAGT 89114 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 || | ||||| | || | | || ||||||||| ||| | || | || || | Sbjct 89113 CGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGTTGGCTTCCACAC 89054 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCT 111622 |||||||||| | ||||| ||||||| || |||| ||||| | | || ||| | Sbjct 89053 GCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCA-CGATGAAGT 88995 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || | ||| || || | || || |||||||| | | || || ||||| ||||| Sbjct 88994 TCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCC 88935 Query 111683 AGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTG 111739 | ||||| ||| | || || || || | ||| |||||| || || || || ||| Sbjct 88934 AAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTG 88875 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 111799 | || || || || | ||| || | |||||| | || |||||||| || || || Sbjct 88874 TCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGAT- 88816 Query 111800 CGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 || | || | || | | | || ||| || || |||||||| |||||||| || Sbjct 88815 GTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCTGCCCACTTGGA 88756 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 ||| || || | | | ||||| | || || || | || || || || | |||| Sbjct 88755 GATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGC 88696 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 | | ||| || |||| || || | ||||||||| || || || || |||||||| Sbjct 88695 CAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGT 88636 Query 111979 TGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 ||||| |||| | | ||||| | || || ||||| | || | || || Sbjct 88635 GGCGTGCGTGAAGAACGAGAGCGACATGTACTCATACGTCTCAAGCACCAGCTTGATATC 88576 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| |||||||| | ||||| ||||||| ||| | ||| || Sbjct 88575 TTCTTTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGG 88531 >seq1 Length=1523961 Score = 127 bits (140), Expect = 3e-24 Identities = 546/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||||||||| |||||||| || | || || | ||||| Sbjct 465635 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 465576 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAA---CTTGTTTGAGGAGA 122487 ||||||| || ||||| ||||| | || | || |||| | ||| || | | Sbjct 465575 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 465519 Query 122488 CGATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||||| | |||| | | ||||||||| ||||| | |||||||| || || | | Sbjct 465518 CGATCAG-CACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTC 465460 Query 122547 -ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| ||||| | ||| || ||| | ||||||||| || || || | ||| Sbjct 465459 CACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 465401 Query 122606 CGTGGATA-GT---TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG--- 122658 |||| | || | ||| || || | ||| || |||| || | || | Sbjct 465400 CGTGCACGCGTGACTCCGGAAGCTTGT---TGACG---AG-CTTGGAGTACATCAAGCAC 465348 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || ||||| || || |||||||| ||||| | ||||| Sbjct 465347 GCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCA 465288 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||||||||| | || | |||||| || || || |||||||| Sbjct 465287 GGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATT 465228 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA 122837 ||||| ||| |||||| || |||| ||||| || ||| ||| || | || | Sbjct 465227 CCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGC-AGCGCGCGAGTCGCA 465169 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| |||||| | |||||||| | ||||| | |||| ||| || | Sbjct 465168 CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAG 465109 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || || | ||| || | || || |||||| |||||||||| || || ||| Sbjct 465108 CAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTC 465049 Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 | |||| ||||| |||||| || || |||| || ||||||| || | Sbjct 465048 GGAGTGAATGTTTTCA--ATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACT 464991 Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075 || || ||| ||||| | | || || ||||| |||||| ||||| Sbjct 464990 TGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCA 464931 Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132 ||||| |||| || || ||| ||||| ||| || || ||| |||| |||| Sbjct 464930 AAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCA---TCTTGACCCAG 464874 Query 123133 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTT 123192 || | || || | |||||| | |||||| || |||||| ||| || ||||| Sbjct 464873 TCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTC 464814 Query 123193 TTATA 123197 || || Sbjct 464813 TTGTA 464809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029566376000