Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq69 237 2e-57 seq1 132 6e-26 >seq69 Length=184949 Score = 237 bits (262), Expect = 2e-57 Identities = 1051/1642 (64%), Gaps = 38/1642 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||| || || ||||||| || || | ||||| || | |||||| Sbjct 90246 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 90187 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || || | ||| | ||||| ||| |||| |||| || || Sbjct 90186 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACC 90127 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 ||||| || |||| ||| | ||| |||| ||||||||||||||| || |||| Sbjct 90126 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 90067 Query 118022 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATGGATCCACCCGCCTTGACC 118079 | ||| || |||| || || | | || | ||||| | || ||||| | | || | Sbjct 90066 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 90012 Query 118080 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 | || | || || || || ||||| ||||| | |||| |||| || |||| Sbjct 90011 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGA 89952 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 | ||| ||||| | ||| ||||| ||||| ||| | || || |||| |||| Sbjct 89951 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTG 89892 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 89891 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 89832 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 |||| | ||| ||| || | ||| | ||| | | | | | || | || |||| Sbjct 89831 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTT-GAGCTTTCAATGCAGCCCA 89773 Query 118316 GTCGTAGTT----GAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 || || || || | | | | ||||||||||||||||| ||| || | | Sbjct 89772 ATCCCAGAGACCAGATGTTGGAGTGACACC-CCACATATCAAACTGGAAGATGCCCTTGC 89714 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTC 118430 | | || || ||||| | || ||||| ||||| | ||| || | ||| || | Sbjct 89713 TCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT- 89655 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490 || || | |||| | | |||| |||||||||||| | |||| | | || | Sbjct 89654 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGC 89595 Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 || || || | || | | |||||| |||| || | ||||| ||||| | Sbjct 89594 TCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATA 89535 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCT 118609 || | |||||||||| | |||||| | || ||| | ||||| | || | Sbjct 89534 CCCACAGGGCGATGTCGTAGATTAGATCGCTTGGCT-TCTGGGATCGGATAGTAGTTGAT 89476 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 ||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| | | Sbjct 89475 ATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAA 89416 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 | ||| | | | || |||| | || | || || || ||||||| || || Sbjct 89415 GTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAGTTGCA 89362 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTC 118787 ||| | | || ||||| |||||||| | | || ||||||||| || | Sbjct 89361 CACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCG 89302 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 118847 ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||||| Sbjct 89301 --AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATG 89244 Query 118848 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG--GCAGCTG 118905 || || || || || || | || | | | ||| || ||| | || | || || Sbjct 89243 TAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGCGCCTT 89185 Query 118906 GCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | | || | ||| |||| | |||||||| ||||| | ||| || || || | Sbjct 89184 G-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCAT 89126 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 ||||| | || | || || | || | || |||||||| ||| ||| | || Sbjct 89125 CACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGT 89066 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 | || || ||||||||||| | ||||||||||| | || | || ||||| || Sbjct 89065 TGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTG 89006 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| ||||| || ||||| | ||| |||| || || | | || || | Sbjct 89005 CACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCAT 88946 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202 ||||||| |||| || | || | ||||| || || | |||| | || | || | Sbjct 88945 GCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAACGT 88886 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 | | |||||| | || || ||||| | ||| || | ||||| | ||| |||||||| Sbjct 88885 AACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTG 88826 Query 119263 TCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 119322 | || || || || | || | | | ||| ||| || || |||||||||| Sbjct 88825 TACCGCGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCTG 88766 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 ||||||| ||||| ||||| | | ||||| || |||| || || || || || || Sbjct 88765 CCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGT 88706 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | | | || | | ||| || |||| ||| |||| |||||||| ||||| || | Sbjct 88705 CTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACA 88646 Query 119443 GAGTTGGTGTCGCGTGGATGAA 119464 | |||||||| ||||| |||| Sbjct 88645 GTGTTGGTGTGGCGTGCGTGAA 88624 >seq1 Length=1523961 Score = 132 bits (146), Expect = 6e-26 Identities = 385/574 (67%), Gaps = 28/574 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || |||||||| ||||| || ||||| || | || ||| | ||||| Sbjct 465635 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 465576 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | ||| | || | || |||| | | || | |||| Sbjct 465575 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACGA 465516 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | | | |||||||||| | ||||| | |||||||| || || | | ||| Sbjct 465515 TCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCACA 465456 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| || ||| |||||||||| || || || | | ||| |||| Sbjct 465455 -GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTCGTG 465397 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTG-CGCAAAGTCTTGAAG-AGTTC---CACGGCA 130018 | | | ||||| || | | ||| || || |||| || | || |||| || Sbjct 465396 CACGCGTGACTCCGGA--AGCT-TGTTGACG---AG-CTTGGAGTACATCAAGCACG-CA 465345 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | || || ||||| |||||||||||||||||| | ||||| ||| Sbjct 465344 AAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGC 465285 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || ||||||||||||||||| || | || || || || || |||||||| ||| Sbjct 465284 ATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCC 465225 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGTATCAAACCA 130197 || ||| ||| || || || | || |||||| ||| ||| | | | || |||| Sbjct 465224 TCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC-GCGAGTCGCACCA 465166 Query 130198 CTTCATCGCCC-ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC---TTCAA 130253 ||||| |||| |||| ||||| || | || |||| ||| | ||| || | | Sbjct 465165 CTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCGATAGCACGTAGCA 465107 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 || | |||||| || | || ||||||||||| Sbjct 465106 AGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 465076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432803563600