Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq69 187 3e-42 seq1 132 5e-26 seq8 118 1e-21 seq46 102 9e-17 seq17 84.2 2e-11 >seq69 Length=184949 Score = 187 bits (206), Expect = 3e-42 Identities = 354/511 (69%), Gaps = 10/511 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||||| || || || || || | ||||||||| | Sbjct 88544 TCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTGCTTGAGACGTATG 88603 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | | ||| | || ||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct 88604 AGTACATGTCGCTCTCGTTCTTCACGCACGCCACACCAACACTGTTTAACGCAGGTAC-- 88661 Query 53313 ATCAC--CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||| || || |||| || ||| | |||| ||| | || || || || || || Sbjct 88662 ACCACGGCCACAACTGTCTTCGTGTTTCTTATTGGCCATGCAAGACGATTCTATTGAGGG 88721 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||| ||||| || |||||| | || || ||||||||||||| | || |||||||| || Sbjct 88722 CATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGGGGTATCGGCAT 88781 Query 53431 CCAC-TGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCC 53488 | | ||| | ||| | || |||| || | | ||| || || || ||| || Sbjct 88782 CAGCATGCAC-AACATTCGCGCGA-CGAATAGCTACATCCGCGGTACAAATGGCACGTCC 88839 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || ||||||||| | || || ||||| |||| || || ||||| | || ||| Sbjct 88840 AACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGT 88899 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||||| |||||||| |||||||| || ||||| | ||||||||||| |||||| | | Sbjct 88900 GGTGGCAAGCGCAAAGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTT 88959 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 ||||| || || || | |||||| ||| | ||| || ||| ||||| ||||| Sbjct 88960 GAGTTCCTGGATTTGAGGAAGAATCACGGTAATGAACTTCATCG-TGCACGTGATCTGTT 89018 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | || ||||||| || || | |||||| Sbjct 89019 TTACGCCATGTGGATCCCAGATTTGTTCATG 89049 Score = 140 bits (154), Expect = 4e-28 Identities = 303/444 (68%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||||||| | ||||||| |||||||| |||||||| ||||||||| ||||||| Sbjct 89812 CGCAACTCCCTGTTGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAAT 89871 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || || | | ||||| | |||| ||||||| ||| || || || || ||||| Sbjct 89872 AATGAATCCATTGAGCCATTCACGTCCAACATGTACAATCGTCGCGTGCTCGCTGGTGAA 89931 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCA--GAAGATCAACAAGTGGAACC 55661 ||| || |||||||| | ||| | ||||| || || ||| | | |||| | Sbjct 89932 TTTACGATCGTCAACAAGTATCTCATGAAGGAGCT-CATCGAA-CTTGGTATCTGGACAC 89989 Query 55662 CGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATTC 55718 | || | | | || ||| |||| || || || || || || ||||| Sbjct 89990 CTGAGGTGCGCAACCAAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTCGATTC 90049 Query 55719 CT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGAT 55776 || ||| ||||||| | ||| || |||||||| || || ||| ||| || | Sbjct 90050 CTGATGC-AATCAAGGAAAAGTACAAAACAGTGTGGGAAATCAAGCAAAAG-GTCGTGTT 90107 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 || || |||||||||||||| |||||| || |||||| |||||| | ||| Sbjct 90108 AGATTTGGCAGCTGATCGTGGTGCCTACATCTGTCAAAGCCAGTCGCTGAACGTGCACAT 90167 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | | || | || |||||||| |||||||||||||||| ||||||| ||||| Sbjct 90168 CGCCGACCCGACGGTGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACT 90227 Query 55897 CAAGACGGGTATGTACTATCTGCG 55920 ||||| || |||||||| |||| Sbjct 90228 TAAGACCGGCATGTACTACATGCG 90251 >seq1 Length=1523961 Score = 132 bits (146), Expect = 5e-26 Identities = 375/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | |||||||| | || || | ||||||||| || || |||||||| || ||| Sbjct 465335 TGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGCCCA 465276 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||||||||| ||||||| ||||||||||| |||||||| || |||||| | Sbjct 465275 CGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGACAGCC 465216 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA--TCGGAAGTC-ATCCAAGTCTGAGCC 74939 ||||| || | || |||| || | | ||| || |||| ||| || ||| Sbjct 465215 GCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTCGCACCACTTCAATGCC 465156 Query 74940 CATTCAGCTTTTCGTTTGAC-CGCA-GGGACAGTATCGATCGC---TTGGAAGAGGCTTG 74994 || || || || | | |||| |||| || ||||| || | | ||| || Sbjct 465155 CAACTGGCCTT--CTTGGTCACGCATGGGATGGTTTCGATAGCACGTAGCAAGTGG---T 465101 Query 74995 CCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 ||||||| ||||| || |||| | ||||||||| ||| |||||| || || ||| Sbjct 465100 CCTTCTCGGTCGGG-TCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGA 465042 Query 75054 ATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 || || || |||| | |||| || | |||||||| | | || || || Sbjct 465041 ATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGCACTTCA 464982 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 | |||||||| | | || || | || || || || ||| || || || ||| Sbjct 464981 CTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCC 464922 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 | || ||||| ||| ||| || | ||| || | ||| |||| ||||||||||| Sbjct 464921 AAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTCAGGTCA 464862 Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGAC 75293 | ||||||| | || || | ||||| |||||| | ||||| ||||||| | | Sbjct 464861 TGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCGGCCTTCTTGTACATGGCC 464802 Query 75294 CACAAGTCAGGGTAATTGATTGGAAA 75319 |||| || || | | |||||| || Sbjct 464801 CACACTTCCGGCTCTTGGATTGGGAA 464776 >seq8 Length=823571 Score = 118 bits (130), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||||| |||||||||||||| | || || || || || Sbjct 301904 GTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGA 301845 Query 152089 CCAGAGGGCT-CGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| || | | | | | | | |||||||| || ||| | | || |||| ||| || Sbjct 301844 CCAGATGGGTACAATAAAGGTAAA-TTGTTGGCACCAACGTAGTCTTGCGCCATATTGAC 301786 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| ||||| |||||| |||||||||||||| || ||||| ||| || Sbjct 301785 AATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTACAGTACCC 301726 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 ||| |||||||| ||||| | || |||| || || ||| ||||| ||| | | || Sbjct 301725 CGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAAAC 301666 Query 152268 CTTGCGCTGGGA 152279 || ||||| || Sbjct 301665 TTTTCGCTGCGA 301654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || || |||||||||||||| | ||| || |||||||| Sbjct 301904 GTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGA 301845 Query 117365 CCACTCGGCTCCAAGA--GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| || | ||| | ||| | |||||||| || || ||| ||| |||| |||| Sbjct 301844 CCAGATGGGTACAATAAAGGTAAA--TTGTTGGCACCAACGTAGTCTTGCGCCATATTGA 301787 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAG 117481 ||||||| || || ||| || || ||||||||||| || ||||| | || ||| Sbjct 301786 CAATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTACA-GTAC 301728 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 ||||| | ||| || ||||| | ||| ||| || || ||| || || || | | Sbjct 301727 CCCGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAA 301668 Query 117542 ACCTTGCGCTG 117552 || || ||||| Sbjct 301667 ACTTTTCGCTG 301657 >seq46 Length=277093 Score = 102 bits (112), Expect = 9e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTG 117363 ||||| |||||||||| |||||||| || || ||||| | ||| | ||||||||||| Sbjct 162957 GTGAAGATGTAACGAGGACTTGCAGCGTCTTTTCCACCCATCAATCTG-GTACCGAATTG 163015 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | || | || | | |||||| ||| ||||| | ||| |||| ||||| Sbjct 163016 GCCGTTTGGAGAGAGAAGATGAATATTGTTGCTGCCGACAAAATCTTGCGCCATGTTGAT 163075 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || || | | ||| |||||| || ||||| || | || |||| ||||||||| Sbjct 163076 AATTGTCCCGTTCAAGCTTTGCTCACCGTGATGATAAGCAGAGTGTTCCGACACGTAGCC 163135 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGAC 117511 |||| ||||| ||||| || || ||| Sbjct 163136 AGCCAATTGAGCTACCTTGATTTCAGAC 163163 >seq17 Length=533465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 |||| ||||| |||| ||||| || || || |||| ||| || ||||| || || Sbjct 484203 CAATGAACTCTCGGACACTGTGGCATTCGCCCGTGGCAACCACGAAATCCTCGGGTTCGT 484144 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGC 159057 || || |||||| ||||||| ||||||||||||| |||| |||||||| |||||| Sbjct 484143 CATGCTGCAGCATGCGCCACATACACTCGACGTAATCCCGCGCATGACCCCAATCGCGC 484085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213879538000