Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17 174 1e-38 >seq17 Length=533465 Score = 174 bits (192), Expect = 1e-38 Identities = 398/594 (67%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 29871 TCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACT 29930 |||| ||||| ||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 296629 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 296688 Query 29931 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29990 | || | | || || ||||| || || |||| ||||| | | ||||||||||| Sbjct 296689 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCAACCGTGTGAGCAAGGCGTAGCTGGCGA 296748 Query 29991 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 296749 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 296808 Query 30051 CTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 30110 | || | || || || ||||| | |||||| ||||| || ||||| || Sbjct 296809 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 296868 Query 30111 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 30167 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 296869 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 296927 Query 30168 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30225 || | |||| || || |||||||| || ||| || | ||| || || ||| Sbjct 296928 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 296983 Query 30226 GTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 | ||||||| || |||||||| | |||||| ||||| || || ||||| ||||| || Sbjct 296984 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 297043 Query 30286 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30345 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 297044 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 297103 Query 30346 GATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 ||| | ||| || ||| |||| || ||| || |||| ||||||||| Sbjct 297104 GATACGAATGTTCTTGTCCTGGAGTGTCTTGGCATTCGTGTCGCCACTGATGAACCACAG 297163 Query 30406 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 297164 TAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 297217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308864908520