Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq31 109 3e-19 seq25 93.3 3e-14 >seq31 Length=344941 Score = 109 bits (120), Expect = 3e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | |||||| ||||| || ||||||||| |||||||| || | || ||| | Sbjct 305277 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTG--C 305334 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | ||||| | || || || || || || ||||||||||| || || || | || | Sbjct 305335 GACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTT 305394 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||| ||| ||| ||||| || | ||| | ||| | |||||| |||| | Sbjct 305395 CCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAG 305454 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||||||| || || ||||| |||||||| ||||||||| Sbjct 305455 TAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 305495 Score = 109 bits (120), Expect = 3e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | |||||| ||||| || ||||||||| |||||||| || | || ||| | Sbjct 324050 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTG--C 323993 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | ||||| | || || || || || || ||||||||||| || || || | || | Sbjct 323992 GACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTT 323933 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||| ||| ||| ||||| || | ||| | ||| | |||||| |||| | Sbjct 323932 CCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAG 323873 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||||||| || || ||||| |||||||| ||||||||| Sbjct 323872 TAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 323832 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT- 34534 || ||| || | |||||| | |||||| || | || ||||||||||| || |||| Sbjct 305036 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 305095 Query 34535 -CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || ||| || || ||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 305096 ACTCAAA--GTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 305153 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 || || | || |||||||| |||||| || || ||| | ||| | ||| Sbjct 305154 GGAGGAATACCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTGTCAATAGAGTCCGAAGG 305212 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 305213 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT- 34534 || ||| || | |||||| | |||||| || | || ||||||||||| || |||| Sbjct 324291 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 324232 Query 34535 -CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || ||| || || ||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 324231 ACTCAAA--GTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 324174 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 || || | || |||||||| |||||| || || ||| | ||| | ||| Sbjct 324173 GGAGGAATACCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTGTCAATAGAGTCCGAAGG 324115 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 324114 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 |||||||| ||||| || | || |||||| |||||||| || || | || ||| | Sbjct 305505 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTG--C 305562 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || ||||| || | ||| || || || || || | || | Sbjct 305563 GACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTT 305622 Query 34607 CCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||||||||||| | | || || | ||| || | || || |||| Sbjct 305623 CCTTGTCTTGAATCTTTTGTTTGACATTAT-CGATCGAGTCGGACGGT-TCGACGTCCAA 305680 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || |||||||| |||||||| Sbjct 305681 TGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 |||||||| ||||| || | || |||||| |||||||| || || | || ||| | Sbjct 323822 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTG--C 323765 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || ||||| || | ||| || || || || || | || | Sbjct 323764 GACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTT 323705 Query 34607 CCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||||||||||| | | || || | ||| || | || || |||| Sbjct 323704 CCTTGTCTTGAATCTTTTGTTTGACATTAT-CGATCGAGTCGGACGGT-TCGACGTCCAA 323647 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || |||||||| |||||||| Sbjct 323646 TGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 >seq25 Length=441456 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 69263 AGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 69322 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCC 34604 ||||||| | ||| || || ||||| || | |||||| || || || || | ||| Sbjct 69323 CCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATTCC 69378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728410912230