Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq31 167 2e-36 seq67 127 2e-24 seq119 84.2 2e-11 >seq31 Length=344941 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || ||| |||| || | || || ||||||||| Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||||||||| ||||||||||| |||||||| || || ||||| Sbjct 305662 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 305603 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 || ||| | || | || || || || | || || || || |||| ||| ||||| Sbjct 305602 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGT-CGCACGTTGAGCGACTACAA 305544 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| || || ||||| |||||| |||| |||||||| Sbjct 305543 CATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGCAT 305493 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || ||| |||| || | || || ||||||||| Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||||||||| ||||||||||| |||||||| || || ||||| Sbjct 323665 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 323724 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||| | || | || || || || | || || | ||| |||| ||| ||||| Sbjct 323725 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGA-TGGTCGCACGTTGAGCGACTACAA 323783 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| || || ||||| |||||| |||| |||||||| Sbjct 323784 CATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGCAT 323834 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || || | |||||| | || ||||| || || Sbjct 305495 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTC 305436 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || |||||||| ||||| || ||||| || || || ||||| Sbjct 305435 GGACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCA 305376 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACA 27165 ||||||||| || | ||| || || || |||||||| || || |||| ||| || | Sbjct 305375 ACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGT-CGCACGTTGAGCGACTATA 305317 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| |||||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 305316 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 305265 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || || | |||||| | || ||||| || || Sbjct 323832 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTC 323891 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || |||||||| ||||| || ||||| || || || ||||| Sbjct 323892 GGACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCA 323951 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||||||| || | ||| || || || |||||||| | ||| |||| ||| || | Sbjct 323952 ACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGA-TGGTCGCACGTTGAGCGACTATA 324010 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| |||||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 324011 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 324062 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || ||||||||| Sbjct 305950 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCC 305891 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| || || ||||| || || || |||||| Sbjct 305890 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 305831 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || || | ||| || || Sbjct 305830 CAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAAT 305771 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| || || ||||| | ||| |||| ||||| || Sbjct 305770 ATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 305721 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || ||||||||| Sbjct 323377 ATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCC 323436 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| || || ||||| || || || |||||| Sbjct 323437 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 323496 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || || | ||| || || Sbjct 323497 CAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAAT 323556 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| || || ||||| | ||| |||| ||||| || Sbjct 323557 ATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 323606 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||| | || |||||||| || Sbjct 305266 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 305207 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || || || ||||| ||||| || || || |||||| Sbjct 305206 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 305147 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| || || | |||||||| Sbjct 305146 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 305087 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||||||||| ||||| || || ||||| | ||| | || ||||||| Sbjct 305086 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGCA 305038 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||| | || |||||||| || Sbjct 324061 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 324120 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || || || ||||| ||||| || || || |||||| Sbjct 324121 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 324180 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| || || | |||||||| Sbjct 324181 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 324240 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||||||||| ||||| || || ||||| | ||| | || ||||||| Sbjct 324241 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGCA 324289 >seq67 Length=206978 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || |||||| | || || || || |||||||| || Sbjct 178169 ATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCTTCG 178110 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| ||||| || || ||||| ||||| || || || ||||| Sbjct 178109 GACAGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 178050 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| ||||||||||| | || |||| || |||||| Sbjct 178049 CAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTACAAC 177990 Query 27168 ATTCAAAAGG 27177 || ||||||| Sbjct 177989 ATCCAAAAGG 177980 >seq119 Length=50977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || || || ||||||||||| | ||||| || |||||||| ||| Sbjct 37706 ATCACGCTCGACGTCGAGCCTTCGGACTCGATTGACAACGTCAAGCAGAAAATTCAGGAC 37765 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||||| || || || ||||| |||||||| || | || ||||| || | ||||| Sbjct 37766 AAGGAAGGAATTCCCCCAGATCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGA 37824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916714691200