Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq17 114 1e-20 >seq17 Length=533465 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 118458 TTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTAT 118517 ||||| || || ||||| | ||| | || |||| ||| || || ||||| || || Sbjct 296624 TTGGATCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGAT 296683 Query 118518 GAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCT 118577 ||| ||||||| | || || || | || || |||| ||| | ||| |||||| Sbjct 296684 GAAATCACCAGCCTTCAGTCCCGTGACCTGTGCGATCAACCGTGTGAGCAAGGCGTAGCT 296743 Query 118578 GGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGA 118637 ||| | ||| || || || ||||| ||||||||||| || | |||||||| ||||| Sbjct 296744 GGCGATATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCT 296803 Query 118638 GAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGA 118697 || || || || || ||||| || |||| | ||||| |||||||| || |||| Sbjct 296804 AAGTTCACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTC 296863 Query 118698 ACTCAGTTGGGCAGGATTCCAGGCTG 118723 ||| | || ||||||||||||| Sbjct 296864 CTTCAAATCCGCTGGATTCCAGGCTG 296889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414475234054840