Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq31 104 2e-17 seq25 87.8 1e-12 >seq31 Length=344941 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || ||||| ||| ||| | || |||||| || Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||||||||| || ||||| ||||| | || || | Sbjct 305662 GACTCGATCGATAAT--GTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATC 305605 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| ||||| || | || || | |||| ||| ||| |||| Sbjct 305604 AGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACA 305545 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||| || ||||| ||||| |||||| ||||||| ||| Sbjct 305544 ACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 305495 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || ||||| ||| ||| | || |||||| || Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||||||||| || ||||| ||||| | || || | Sbjct 323665 GACTCGATCGATAAT--GTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATC 323722 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| ||||| || | || || | |||| ||| ||| |||| Sbjct 323723 AGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACA 323782 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||| || ||||| ||||| |||||| ||||||| ||| Sbjct 323783 ACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 323832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || |||||| ||||| | ||||| || | | Sbjct 305494 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 305435 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || |||||||| || || |||||| |||| || | Sbjct 305434 GACTCTATTGACAAT--GTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATC 305377 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| || ||||| || ||||| || | |||| ||| ||| || | Sbjct 305376 AACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATA 305317 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| | ||| ||||||| || Sbjct 305316 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 305268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || |||||| ||||| | ||||| || | | Sbjct 323833 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 323892 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || |||||||| || || |||||| |||| || | Sbjct 323893 GACTCTATTGACAAT--GTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATC 323950 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| || ||||| || ||||| || | |||| ||| ||| || | Sbjct 323951 AACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATA 324010 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| | ||| ||||||| || Sbjct 324011 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 324059 >seq25 Length=441456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| || || |||||||| |||| |||| |||| || Sbjct 69366 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAATTGGAAGACGGCCGCACGCTGTCGGAC 69307 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||||||| | || ||||| |||||| ||||||| || Sbjct 69306 TACAACATCCAGAAGGAGAGCACGCTCCACTTGGTGTTGCGTCTGCGTGGTGG 69254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861055507370